add proper tests to intervene #25392
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- remove/invert restriction on pandas which was fixed in 0.6.5 asntech/intervene#40 (comment) - running the tool outputs deprection warnings for matplotlib >= 3.4 .. so I added a version restriction
for
```
Traceback (most recent call last):
File "/home/circleci/project/miniconda/bin/bioconda-utils", line 8, in <module>
sys.exit(main())
File "/home/circleci/project/miniconda/lib/python3.7/site-packages/bioconda_utils/cli.py", line 971, in main
bioconductor_skeleton, clean_cran_skeleton, autobump, bot
File "/home/circleci/project/miniconda/lib/python3.7/site-packages/argh/dispatching.py", line 328, in dispatch_commands
dispatch(parser, *args, **kwargs)
File "/home/circleci/project/miniconda/lib/python3.7/site-packages/argh/dispatching.py", line 174, in dispatch
for line in lines:
File "/home/circleci/project/miniconda/lib/python3.7/site-packages/argh/dispatching.py", line 277, in _execute_command
for line in result:
File "/home/circleci/project/miniconda/lib/python3.7/site-packages/argh/dispatching.py", line 260, in _call
result = function(*positional, **keywords)
File "<boltons.funcutils.FunctionBuilder-5>", line 2, in build
File "/home/circleci/project/miniconda/lib/python3.7/site-packages/bioconda_utils/cli.py", line 130, in wrapper
func(*args, **kwargs)
File "<boltons.funcutils.FunctionBuilder-4>", line 2, in build
File "/home/circleci/project/miniconda/lib/python3.7/site-packages/bioconda_utils/cli.py", line 59, in wrapper
func(*args, **kwargs)
File "/home/circleci/project/miniconda/lib/python3.7/site-packages/bioconda_utils/cli.py", line 476, in build
keep_old_work=keep_old_work)
File "/home/circleci/project/miniconda/lib/python3.7/site-packages/bioconda_utils/build.py", line 343, in build_recipes
linter=linter)
File "/home/circleci/project/miniconda/lib/python3.7/site-packages/bioconda_utils/build.py", line 149, in build
pkg_test.test_package(pkg_path, base_image=base_image)
File "/home/circleci/project/miniconda/lib/python3.7/site-packages/bioconda_utils/pkg_test.py", line 170, in test_package
p = utils.run(cmd, env=env, cwd=d, mask=False)
File "/home/circleci/project/miniconda/lib/python3.7/tempfile.py", line 805, in __exit__
self.cleanup()
File "/home/circleci/project/miniconda/lib/python3.7/tempfile.py", line 809, in cleanup
_shutil.rmtree(self.name)
File "/home/circleci/project/miniconda/lib/python3.7/shutil.py", line 485, in rmtree
_rmtree_safe_fd(fd, path, onerror)
File "/home/circleci/project/miniconda/lib/python3.7/shutil.py", line 423, in _rmtree_safe_fd
_rmtree_safe_fd(dirfd, fullname, onerror)
File "/home/circleci/project/miniconda/lib/python3.7/shutil.py", line 443, in _rmtree_safe_fd
onerror(os.unlink, fullname, sys.exc_info())
File "/home/circleci/project/miniconda/lib/python3.7/shutil.py", line 441, in _rmtree_safe_fd
os.unlink(entry.name, dir_fd=topfd)
PermissionError: [Errno 13] Permission denied: 'Intervene_pairwise_frac_matrix.txt'
```
bernt-matthias
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@BiocondaBot please add label |
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@BiocondaBot please merge |
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I will attempt to upload artifacts and merge this PR. This may take some time, please have patience. |
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so I added a version restriction
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