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add new recipe selenzy_wrapper v0.0.4 #31359

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merged 6 commits into from Dec 1, 2021
Merged

add new recipe selenzy_wrapper v0.0.4 #31359

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585e366
add new recipe selenzy_wrapper v0.0.4
kenza12 Nov 3, 2021
a03baaf
update selenzy_wrapper to 0.0.6
kenza12 Nov 17, 2021
8a90a8c
update sha256 for tag 0.0.6
kenza12 Nov 25, 2021
4551d6d
execute only 1 test to avoid memory issues
kenza12 Nov 30, 2021
793becf
select another test file to avoid memory issues
kenza12 Nov 30, 2021
68a7ee9
dont check test files because of memory limit
kenza12 Nov 30, 2021
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45 changes: 45 additions & 0 deletions recipes/selenzy_wrapper/meta.yaml
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{% set name = "selenzy_wrapper" %}
{% set version = "0.0.6" %}

package:
name: {{ name|lower }}
version: {{ version }}

source:
url: https://github.com/brsynth/selenzy-wrapper/archive/{{ version }}.tar.gz
sha256: 6a3651672b155c3870338f532b664f291bd95adff1a7a4df539ff931cfafdc7f

build:
number: 0
noarch: python
script: {{ PYTHON }} -m pip install -vv .

requirements:
host:
- python >=3.7,<3.10
- pip
run:
- python >=3.7,<3.10
- biopython >1.70,<=1.77
- brs_utils
- emboss
- rptools
test:
source_files:
- tests/
imports:
- selenzy_wrapper
requires:
- pytest

about:
home: https://github.com/brsynth/selenzy-wrapper
summary: Python wrapper of selenzy tool
license: MIT
license_file: LICENSE

extra:
recipe-maintainers:
- breakthewall
- kenza12

5 changes: 5 additions & 0 deletions recipes/selenzy_wrapper/run_test.sh
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#!/usr/bin/env bash

echo -e "\n\n*** TEST ***\n\n"
python -m selenzy_wrapper --help
pytest -v
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Please don't run your full tests.

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Also, is there no executable installed for this? Typically python packages would be executed like selenzy --help or something like that.

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Hi @dpryan79 ,

Thanks for your reply.

I tried to run only one test but it always returns the same memory error. Finally, we decided not to run tests and to only check the imports and the help command line: python -m selenzy_wrapper --help .
We don't have an executable selenzy --help , we execute the package with this command python -m selenzy_wrapper --help .

Thank your for your work.

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Maybe in a future release adding a script to be invoked will make the tool more handy :)