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Add circtools-1.2.1 #37786

Merged
merged 8 commits into from
Nov 16, 2022
Merged

Add circtools-1.2.1 #37786

merged 8 commits into from
Nov 16, 2022

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BarryDigby
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Add a suite of circRNA tools to bioconda. Pypi source: https://pypi.org/project/circtools/

Works fine hosted on my own repo/channel/organization(?) https://anaconda.org/b.digby/circtools

includes:

  • DCC
  • FUCHS
  • CircTest

@BarryDigby BarryDigby mentioned this pull request Nov 3, 2022
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@BarryDigby
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@BiocondaBot please add label

@BiocondaBot BiocondaBot added the please review & merge set to ask for merge label Nov 15, 2022
@BarryDigby
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@BiocondaBot please fetch artifacts

@BiocondaBot
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No artifacts found on the most recent Azure build. Either the build failed, the artifacts have were removed due to age, or the recipe was blacklisted/skipped.


test:
commands:
- DCC -h
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Maybe add tests for the other two commands you mentioned?

@pinin4fjords
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I suspect you've made a git error in the removal of the involucro recipe?

@BarryDigby
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@pinin4fjords re. the involucro recipe, I had naively thought this was some sort of artifact from local builds. Should I restore it?

@pinin4fjords
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@pinin4fjords re. the involucro recipe, I had naively thought this was some sort of artifact from local builds. Should I restore it?

That or re-do the commits without removing those files and force push, but anything that gets you to a clean PR will be okay.

@dpryan79
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@BiocondaBot please fetch artifacts

@BiocondaBot
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Package(s) built on Azure are ready for inspection:

Arch Package Zip File
noarch dcc-0.5.0-pyhca03a8a_0.tar.bz2 LinuxArtifacts
noarch circtools-1.2.1-pyh7cba7a3_0.tar.bz2 LinuxArtifacts

You may also use conda to install these after downloading and extracting the appropriate zip file. From the LinuxArtifacts or OSXArtifacts directories:

conda install -c ./packages <package name>

Docker image(s) built (images are in the LinuxArtifacts zip file above):

Package Tag Install with docker
dcc 0.5.0--pyhca03a8a_0
showgzip -dc LinuxArtifacts/images/dcc:0.5.0--pyhca03a8a_0.tar.gz | docker load
circtools 1.2.1--pyh7cba7a3_0
showgzip -dc LinuxArtifacts/images/circtools:1.2.1--pyh7cba7a3_0.tar.gz | docker load

@dpryan79
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@BiocondaBot please merge

@BiocondaBot
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I will attempt to upload artifacts and merge this PR. This may take some time, please have patience.

@BiocondaBot BiocondaBot merged commit 0664d51 into bioconda:master Nov 16, 2022
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4 participants