Bump GATK4 gcnvkernel

[matthdsm]

Attempt to gatk in gcnvkernel

---

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[maxulysse]

LGTM

[matthdsm]

gcnvkernel build fails with

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2024-02-12T09:14:53.2754430Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - r-ggplot2 3.3.0.*�[0m
2024-02-12T09:14:53.2755403Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - python 3.6.10.*�[0m
2024-02-12T09:14:53.2755694Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - mkl-service 2.3.0.*�[0m
2024-02-12T09:14:53.2755962Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - r-optparse 1.6.4.*�[0m
2024-02-12T09:14:53.2756360Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - pandas 1.0.3.*�[0m
2024-02-12T09:14:53.2756616Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - r-data.table 1.12.8.*�[0m
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2024-02-12T09:14:53.2759231Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - r-base 3.6.2.*�[0m
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2024-02-12T09:14:53.2759768Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - r-gsalib 2.1.*�[0m
2024-02-12T09:14:53.2760156Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - r-dplyr 0.8.5.*�[0m
2024-02-12T09:14:53.2760417Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - typing_extensions 4.1.1.*�[0m
2024-02-12T09:14:53.2760809Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - tensorflow 1.15.0.*�[0m
2024-02-12T09:14:53.2761097Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - mkl 2019.5.*�[0m
2024-02-12T09:14:53.2761334Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - pip 21.3.1.*�[0m
2024-02-12T09:14:53.2761747Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - numpy 1.17.5.*�[0m
2024-02-12T09:14:53.2761985Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - dill 0.3.4.*�[0m
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2024-02-12T09:14:53.2762639Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - intel-openmp 2019.4.*�[0m
2024-02-12T09:14:53.2763077Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - r-gplots 3.0.3.*�[0m
2024-02-12T09:14:53.2763463Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT) �[0m
2024-02-12T09:14:53.2763705Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT) with channels:�[0m
2024-02-12T09:14:53.2763957Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - file:///opt/host-conda-bld�[0m
2024-02-12T09:14:53.2764210Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - conda-forge�[0m
2024-02-12T09:14:53.2764477Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - bioconda�[0m
2024-02-12T09:14:53.2764846Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT)  - defaults�[0m
2024-02-12T09:14:53.2765074Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT) �[0m
2024-02-12T09:14:53.2765321Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT) The reported errors are:�[0m
2024-02-12T09:14:53.2765687Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT) - Encountered problems while solving:�[0m
2024-02-12T09:14:53.2766046Z 09:14:53 �[32mBIOCONDA INFO�[0m (OUT) -   - package tensorflow-1.15.0-mkl_py37h28c19af_0 is excluded by strict repo priority�[0m

[matthdsm]

ugh... 🙄

10:49:38 BIOCONDA INFO (OUT) OSError: [Errno 28] No space left on device

[matthdsm]

Reverted all commits for the gatk recipe to fix the no space left issue