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If this PR adds or updates a recipe, use "Add" or "Update" appropriately as the first word in its title.
New recipes not directly relevant to the biological sciences need to be submitted to the conda-forge channel instead of Bioconda.
PRs require reviews prior to being merged. Once your PR is passing tests and ready to be merged, please issue the @BiocondaBot please add label command.
Please post questions on Gitter or ping @bioconda/core in a comment.
Instructions for avoiding API, ABI, and CLI breakage issues
Conda is able to record and lock (a.k.a. pin) dependency versions used at build time of other recipes.
This way, one can avoid that expectations of a downstream recipe with regards to API, ABI, or CLI are violated by later changes in the recipe.
If not already present in the meta.yaml, make sure to specify run_exports (see here for the rationale and comprehensive explanation).
Add a run_exports section like this:
build:
run_exports:
- ...
with ... being one of:
Case
run_exports statement
semantic versioning
{{ pin_subpackage("myrecipe", max_pin="x") }}
semantic versioning (0.x.x)
{{ pin_subpackage("myrecipe", max_pin="x.x") }}
known breakage in minor versions
{{ pin_subpackage("myrecipe", max_pin="x.x") }} (in such a case, please add a note that shortly mentions your evidence for that)
known breakage in patch versions
{{ pin_subpackage("myrecipe", max_pin="x.x.x") }} (in such a case, please add a note that shortly mentions your evidence for that)
calendar versioning
{{ pin_subpackage("myrecipe", max_pin=None) }}
while replacing "myrecipe" with either name if a name|lower variable is defined in your recipe or with the lowercase name of the package in quotes.
Bot commands for PR management
Please use the following BiocondaBot commands:
Everyone has access to the following BiocondaBot commands, which can be given in a comment:
@BiocondaBot please update
Merge the master branch into a PR.
@BiocondaBot please add label
Add the please review & merge label.
@BiocondaBot please fetch artifacts
Post links to CI-built packages/containers. You can use this to test packages locally.
Note that the @BiocondaBot please merge command is now depreciated. Please just squash and merge instead.
Also, the bot watches for comments from non-members that include @bioconda/<team> and will automatically re-post them to notify the addressed <team>.
@mencian hello, I have been experiencing this error continuously during the automatic testing process since submitting the update, but I have not been able to find the cause. It seems that there is an issue with the azure pipelines? Can you help me check the reason? Thank you !
@mencian hello, I have been experiencing this error continuously during the automatic testing process since submitting the update, but I have not been able to find the cause. It seems that there is an issue with the azure pipelines? Can you help me check the reason? Thank you !
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Describe your pull request here
Please read the guidelines for Bioconda recipes before opening a pull request (PR).
General instructions
@BiocondaBot please add label
command.@bioconda/core
in a comment.Instructions for avoiding API, ABI, and CLI breakage issues
Conda is able to record and lock (a.k.a. pin) dependency versions used at build time of other recipes.
This way, one can avoid that expectations of a downstream recipe with regards to API, ABI, or CLI are violated by later changes in the recipe.
If not already present in the meta.yaml, make sure to specify
run_exports
(see here for the rationale and comprehensive explanation).Add a
run_exports
section like this:with
...
being one of:{{ pin_subpackage("myrecipe", max_pin="x") }}
{{ pin_subpackage("myrecipe", max_pin="x.x") }}
{{ pin_subpackage("myrecipe", max_pin="x.x") }}
(in such a case, please add a note that shortly mentions your evidence for that){{ pin_subpackage("myrecipe", max_pin="x.x.x") }}
(in such a case, please add a note that shortly mentions your evidence for that){{ pin_subpackage("myrecipe", max_pin=None) }}
while replacing
"myrecipe"
with eithername
if aname|lower
variable is defined in your recipe or with the lowercase name of the package in quotes.Bot commands for PR management
Please use the following BiocondaBot commands:
Everyone has access to the following BiocondaBot commands, which can be given in a comment:
@BiocondaBot please update
@BiocondaBot please add label
please review & merge
label.@BiocondaBot please fetch artifacts
You can use this to test packages locally.
Note that the
@BiocondaBot please merge
command is now depreciated. Please just squash and merge instead.Also, the bot watches for comments from non-members that include
@bioconda/<team>
and will automatically re-post them to notify the addressed<team>
.