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r-spp: add linux-aarch64 build #48467

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merged 2 commits into from
Jun 14, 2024
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Describe your pull request here


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Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
@martin-g martin-g added the aarch64 Related to adding linux-aarch64 support label Jun 14, 2024
…st mentioning it

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
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@BiocondaBot please fetch artifacts

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Package(s) built are ready for inspection:

Arch Package Zip File / Repodata CI Instructions
linux-64 r-spp-1.16.0-r43h21a89ab_10.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
osx-64 r-spp-1.16.0-r43h71b3455_10.tar.bz2 OSXArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
linux-aarch64 r-spp-1.16.0-r43hb19973c_10.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/55dd5a92-61e8-4ce3-9039-2e3e9b64c8e6/artifacts/0/tmp/artifacts/packages <package name>

Docker image(s) built:

Package Tag CI Install with docker
r-spp 1.16.0--r43h21a89ab_10 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/r-spp:1.16.0--r43h21a89ab_10.tar.gz | docker load

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mgrigorov in 🌐 euler-arm-22 in /tmp/spp via 🅒 test123 took 6s 
❯ tar xvf r-spp-1.16.0-r43hb19973c_10.tar.bz2                                                                                                                                                              (test123) 
info/run_exports.json
info/test/run_test.sh
info/recipe/build.sh
info/hash_input.json
info/recipe/Makevars.patch
info/index.json
info/files
info/licenses/DESCRIPTION
info/recipe/meta.yaml.template
info/paths.json
info/recipe/conda_build_config.yaml
info/recipe/meta.yaml
info/about.json
info/git
lib/R/library/spp/help/spp.rdx
lib/R/library/spp/R/spp.rdx
lib/R/library/spp/R/spp
lib/R/library/spp/help/spp.rdb
lib/R/library/spp/R/spp.rdb
lib/R/library/spp/libs/spp.so
lib/R/library/spp/html/R.css
lib/R/library/spp/Meta/features.rds
lib/R/library/spp/help/aliases.rds
lib/R/library/spp/help/paths.rds
lib/R/library/spp/Meta/links.rds
lib/R/library/spp/Meta/nsInfo.rds
lib/R/library/spp/Meta/package.rds
lib/R/library/spp/Meta/hsearch.rds
lib/R/library/spp/Meta/Rd.rds
lib/R/library/spp/help/AnIndex
lib/R/library/spp/html/00Index.html
lib/R/library/spp/DESCRIPTION
lib/R/library/spp/NAMESPACE
lib/R/library/spp/INDEX

mgrigorov in 🌐 euler-arm-22 in /tmp/spp via 🅒 test123 
❯ file lib/R/library/spp/libs/spp.so                                                                                                                                                                       (test123) 
lib/R/library/spp/libs/spp.so: ELF 64-bit LSB shared object, ARM aarch64, version 1 (SYSV), dynamically linked, not stripped

mgrigorov in 🌐 euler-arm-22 in /tmp/spp via 🅒 test123 
❯ conda install ./r-spp-1.16.0-r43hb19973c_10.tar.bz2                                                                                                                                                      (test123) 
Retrieving notices: ...working... done

Downloading and Extracting Packages:
                                                                                                                                                                                                                     

Downloading and Extracting Packages:

Preparing transaction: done
Verifying transaction: done
Executing transaction: done

mgrigorov in 🌐 euler-arm-22 in /tmp/spp via 🅒 test123 took 8s 
❯ ~/miniconda3/envs/test123/bin/R                                                                                                                                                                          (test123) 

R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-conda-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(spp)
Loading required package: Rcpp

LGTM!

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@BiocondaBot please add label

@BiocondaBot BiocondaBot added the please review & merge set to ask for merge label Jun 14, 2024
@mencian mencian merged commit 0e89c2d into bioconda:master Jun 14, 2024
6 checks passed
aliciaaevans pushed a commit that referenced this pull request Jun 14, 2024
* r-spp: add linux-aarch64 build

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Add run_exports. Use DESCRIPTION as a license file, although it is just mentioning it

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

---------

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
@martin-g martin-g deleted the aarch64-r-spp branch June 17, 2024 06:35
aliciaaevans added a commit that referenced this pull request Jun 17, 2024
* [ci skip] remove build failure record for recipe recipes/cooltools/0.3.2

* round of bulk fixes

* bulk fixes and skips

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* python-libsbml was moved to conda-forge

* skip python 3.12

* skip python 3.12

* skiplist with category

* skiplist with category

* use python var

* remove unnecessary constraint

* bump divergent build

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* [ci skip] remove build failure record for recipe recipes/unicycler/0.4.4

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* remove subdag-depth

* skiplist and categorize build failures

* bump build number

* add run_exports

* try limiting py version more

* build failure

* build failure category and skiplist

* skiplist and categorize build failure

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* skiplist build failures

* bump divergent

* skiplist

* update build failure sha

* moved to conda-forge

* skip build failure

* bump for divergent build strings

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* bulk fixes and failures

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* [ci skip] fix pcaone openmp dependency

* [ci skip] remove build failure record for recipe recipes/genometools-genometools

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* remove caching as it causes problems and doesn't save much time

* move run_exports to correct location

* add run_exports

* rebuild failure

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* bulk fixes and failures

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* remove bad character

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* bulk fixes and failures

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* exclude bioconda-repodata-patches

* the other one is not the same

* only run linux but add extra runners

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* rebuild osx failures

* revert runner changes

* add run_exports

* remove build failure

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* add run_exports

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* revert temporary CI changes

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* skiplist build failures

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* [ci skip] add build failure record for recipe recipes/pegasuspy

* bump updated recipes

* centrifuge: add linux-aarch64 build (#48450)

* centrifuge: add linux-aarch64 build

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Add a patch for fixing the build on linux aarch64

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

---------

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Update matchms to 0.26.4 (#48478)

* r-spp: add linux-aarch64 build (#48467)

* r-spp: add linux-aarch64 build

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Add run_exports. Use DESCRIPTION as a license file, although it is just mentioning it

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

---------

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* callerpp: add linux-aarch64 build (#48442)

* callerpp: add linux-aarch64 build

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Allow signed char for Linux aarch64

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Bump the version to 0.1.5

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

---------

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* genepop: add linux-aarch64 build (#48468)

* genepop: add linux-aarch64 build

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Remove from the blacklist

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Fix the source url to an existing one, pointing to R-genepop 1.2.2

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Reset the build number to 0

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Require C++ for the build

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Use Github tag for v1.2.2. Fix the build

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Improve the test to deal with the new interactive behavior of the program

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Simplify the test. It seems `echo -e` does not work well at the CI systems

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

---------

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* velvet: add linux-aarch64 build (#48469)

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Update earlgrey to 4.3.0 (#48477)

* bump build number

* skiplist failures

* Update pybiolib to 1.1.2141 (#48479)

* [ci run] trigger bulk run

* [ci skip] add build failure record for recipe recipes/curves

* bump build number for pinnings

* [ci run] trigger bulk run

* [ci skip] add build failure record for recipe recipes/curves

* skiplist

* add run exports

* bump build number

* [ci run] trigger bulk run

* [ci run] trigger bulk run

---------

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
Co-authored-by: BiocondaBot <BiocondaBot@users.noreply.github.com>
Co-authored-by: Ryan Dale <ryan.dale@nih.gov>
Co-authored-by: Johannes Koester <johannes.koester@uni-due.de>
Co-authored-by: Martin Grigorov <martin-g@users.noreply.github.com>
Co-authored-by: Bioconda Bot <47040946+BiocondaBot@users.noreply.github.com>
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