update CI for core and genbank2gff

bioconvert · Apr 13, 2022 · 04db42c · 04db42c
1 parent f63c348
commit 04db42c
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/.github/workflows/genbank2gff3.yml b/.github/workflows/genbank2gff3.yml
@@ -42,7 +42,7 @@ jobs:
         echo $CONDA/bin >> $GITHUB_PATH
     - name: Install dependencies conda
       run: |
-        conda install -c conda-forge --quiet mamba python=${{ matrix.python }}
+        conda install -c conda-forge --quiet 'mamba=0.15.3' python=${{ matrix.python }}
         mamba install -c conda-forge -c bioconda --quiet -y samtools bedtools bamtools mosdepth pbzip2 pigz dsrc sambamba squizz
     - name: Install bioconvert with pip
       run: |
@@ -51,4 +51,4 @@ jobs:
         pip install .
     - name: Test with pytest
       run: |
-        pytest -n 1  --cov-report term --cov=bioconvert.genbank2gff3 test/test_genbank2gff3.py
+        pytest -n 1  --cov-report term --cov=bioconvert.genbank2gff3 test/test_genbank2gff3.py
diff --git a/.github/workflows/sam2bam.yml b/.github/workflows/sam2bam.yml
@@ -51,4 +51,4 @@ jobs:
         pip install .
     - name: Test with pytest
       run: |
-        pytest -n 1  --cov-report term --cov=bioconvert.sam2bam test/test_sam2bam.py
+        pytest -n 1  --cov-report term --cov=bioconvert.sam2bam test/test_sam2bam.py