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Bam2fastq conversion #325

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khourhin opened this issue Feb 3, 2023 · 0 comments

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khourhin commented Feb 3, 2023

Bamt2fastq conversion has an non intuitive behavior:

when reads are paired: it creates a temporary fast.gz which is actually a fastq uncompressed with both reads and then creates 2 fastq.gz with R1 and R2 separated
when reads are single: it creates correctly a fastq.gz

khourhin mentioned this issue

Bam2fastq conversion sequana/bioconvert#4

Closed

cokelaer added a commit to cokelaer/bioconvert that referenced this issue


          Fix bioconvert#325

1e3b5bf

cokelaer closed this as completed

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