Dbbact version (#252)

* add semantic version support to database version check * update minimal dbbact version in config file to semantic version
biocore · Apr 9, 2021 · 19aa22b · 19aa22b
1 parent 881e136
commit 19aa22b
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/calour/calour.config b/calour/calour.config
@@ -4,7 +4,7 @@ class_name = DBBact
 website = www.dbbact.org
 installation = pip install git+git://github.com/amnona/dbbact-calour
 description = manual annotations about bacterial amplicon sequences
-min_version = 1.1.0
+min_version = 1.4
 
 [sponge]
 module_name = spongeworld_calour

diff --git a/calour/database.py b/calour/database.py
@@ -28,6 +28,7 @@
 
 from .util import get_config_value, get_config_file, get_config_sections
 from .experiment import Experiment
+from packaging import version
 
 logger = getLogger(__name__)
 
@@ -57,7 +58,7 @@ def _get_database_class(dbname, exp=None, config_file_name=None):
     '''
     class_name = get_config_value('class_name', section=dbname, config_file_name=config_file_name)
     module_name = get_config_value('module_name', section=dbname, config_file_name=config_file_name)
-    min_version = get_config_value('min_version', section=dbname, config_file_name=config_file_name, fallback='0.0')
+    min_version = version.parse(get_config_value('min_version', section=dbname, config_file_name=config_file_name, fallback='0.0'))
     module_website = get_config_value('website', section=dbname, config_file_name=config_file_name, fallback='NA')
 
     if class_name is not None and module_name is not None: