Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Migrate psipred conda recipe to bioconda ? #125

Open
loraine-gueguen opened this issue Mar 29, 2022 · 0 comments
Open

Migrate psipred conda recipe to bioconda ? #125

loraine-gueguen opened this issue Mar 29, 2022 · 0 comments

Comments

@loraine-gueguen
Copy link

loraine-gueguen commented Mar 29, 2022

Hi,

I am currently writing the conda recipe for the RREfinder tool (https://github.com/Alexamk/RREFinder). This tool requires psipred (http://bioinf.cs.ucl.ac.uk/psipred/) for which you offer the conda recipe and the conda package via the biocore channel.

However, in bioconda, all dependencies must come from the following conda channels: defaults, conda-forge, bioconda. Therefore, I still miss the psipred dependency to build the RRefinder bioconda package: bioconda/bioconda-recipes#33650

I saw that you intended to migrate the psipred conda recipe to bioconda: #62 (comment)
Is this possible? That would be great and that would solve my dependency problem!

Tell me if I can help in any way!
I can open a new PR in bioconda with a recipe largely inspired by yours, if you want, but you are more legitimate than I am to do so :-)

Regards,

Loraine

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant