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fix comment regarding output files
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amnona committed Feb 9, 2017
1 parent dfd7185 commit 81a2015
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions scripts/deblur
Original file line number Diff line number Diff line change
Expand Up @@ -649,8 +649,9 @@ def workflow(seqs_fp, output_dir, pos_ref_fp, pos_ref_db_fp,
create_otu_table(output_fp, samples,
outputfasta_fp=outputfasta_fp, minreads=min_reads)

# also create a biom table with
# only 16s sequences and with only non-16s sequences
# also create biom tables with
# only sequences matching the pos_ref_fp sequences (reference-hit.biom)
# and only sequences not matching the pos_ref_fp sequences (reference-non-hit.biom)
tmp_files = remove_artifacts_from_biom_table(output_fp, outputfasta_fp,
pos_ref_fp, output_dir,
pos_ref_db_fp,
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