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MAINT: stop using deprecated pandas reindex_axis #280

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MAINT: stop using deprecated pandas reindex_axis #280

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8 changes: 4 additions & 4 deletions gneiss/tests/test_util.py
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Original file line number Diff line number Diff line change
Expand Up @@ -335,13 +335,13 @@ def test_biom_match(self):
exp_df = pd.DataFrame(exp_table.to_dataframe())
res_df = pd.DataFrame(res_table.to_dataframe())

exp_df = exp_df.reindex_axis(sorted(exp_df.columns), axis=1)
res_df = res_df.reindex_axis(sorted(res_df.columns), axis=1)
exp_df = exp_df.reindex(sorted(exp_df.columns), axis=1)
res_df = res_df.reindex(sorted(res_df.columns), axis=1)

pdt.assert_frame_equal(exp_df, res_df)

exp_md = exp_md.reindex_axis(sorted(exp_md.index), axis=0)
res_md = res_md.reindex_axis(sorted(res_md.index), axis=0)
exp_md = exp_md.reindex(sorted(exp_md.index), axis=0)
res_md = res_md.reindex(sorted(res_md.index), axis=0)

pdt.assert_frame_equal(res_md, exp_md)

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2 changes: 1 addition & 1 deletion gneiss/util.py
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Expand Up @@ -242,7 +242,7 @@ def _dense_match_tips(table, tree):
_tree.bifurcate()
_tree.prune()
sorted_features = [n.name for n in _tree.tips()]
_table = _table.reindex_axis(sorted_features, axis=1)
_table = _table.reindex(sorted_features, axis=1)
return _table, _tree


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