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final (hopefully) address of Stefan's comments
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tkosciol committed Aug 14, 2017
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Expand Up @@ -63,16 +63,13 @@ According to our criteria, hits 1 and 2 are matches (probability >= 90.0 and fra
So `CP00000.0_1.match` file will contain sequences:
```
>CP00000.0_1_10-30
---------EXAMPLEEXAMPLEEXAMPL-----------------------------------------
------------------------------
EXAMPLEEXAMPLEEXAMPL
>CP00000.0_1_33-88
---------------------------------EXAMPLEEXAMPLEEXAMPLEEXAMPLEEXAMPLEEX
AMPLEEXAMPLEEXAMPL------------
EXAMPLEEXAMPLEEXAMPLEEXAMPLEEXAMPLEEXAMPLEEXAMPLEEXAMPL
```
and `CP00000.0_1.non_match` will contain sequence:
```
>CP00000.0_1_89-100
----------------------------------------------------------------------
------------------EXAMPLEEXAMP
EXAMPLEEXAMP
```
Sub-sequences `CP00000.0_1_1-9` and `CP00000.0_1_31-33` will be dropped from subsequent analyses, as they did not match `minimum fragment length` criteria.

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