identify_missing_files.py
identify_missing_files.py -- This script checks for the existence of expected files in parallel runs.
Description:
This script checks for the existence of expected files in parallel runs, and is useful for checking the status of a parallel run or for finding out what poller.py is waiting on in a possibly failed run.
Usage: identify_missing_files.py [options]
Input Arguments:
Note
[REQUIRED]
- -e, --expected_out_fp
The list of expected output files
Output:
This script does not create any output files.
Example:
Check for the existence of files listed in expected_out_files.txt from a PyNAST alignment run, and print a warning for any that are missing.
identify_missing_files.py -e ALIGN_BQ7_/expected_out_files.txt