Official repository for QIIME 1 software, unit tests and documentation.
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Latest commit 6d8ffca Aug 16, 2016 @gregcaporaso gregcaporaso committed on GitHub Merge pull request #2151 from iugrina/doc_fix
improve doc for filter_fasta (--valid_states)

QIIME: Quantitative Insights Into Microbial Ecology

Build Status

For information on QIIME, see the QIIME website. To get help with using QIIME, visit

QIIME 1 is now considered to be in maintenance mode as we shift our development efforts to QIIME 2. We don't expect to release any new versions of QIIME 1, except for critical bug fixes if necessary. If you're interested in contributing to QIIME, please consider contributing to QIIME 2.

For related software projects and data, see biocore.