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Fix timestamp / -> - #2075

Merged
merged 6 commits into from
Feb 15, 2017
Merged

Fix timestamp / -> - #2075

merged 6 commits into from
Feb 15, 2017

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antgonza
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@antgonza antgonza commented Feb 9, 2017

@wasade and @josenavas this is what we discussed during the last meeting about the new timestamp formats.

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@antgonza unfortunately changing / to - are not enough since the actual proposed change also involved changing the order of the data: %m/%d/%Y %H:%M:%S -> %Y-%m-%d %H:%M:%S

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Coverage Status

Coverage decreased (-0.03%) to 91.555% when pulling c8113ea on antgonza:fix-timestamp into 53188a6 on biocore:master.

@antgonza
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This is ready for review: @josenavas, @wasade, @ElDeveloper

A lot of the changes were to update the tests to match the new date formats. Remember that now we are actually patching the test DB/files so this change also implies that I needed to change how we are testing some functionality. However, I think there are not big changes.

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Just some comments. A few blocks were a bit confusing

break
except ValueError:
pass
if date is not None:
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this block is rather confusing...

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Any suggestions? Basically, is testing which is the fmt of the date within the old formats, if it's found it using the new format. Now, new format doesn't accept 2 digits so I'm simply reassigning to one with 4 digits if one of the 2 year digits is found ...

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Ah. What about a format mapping: {old_fmt: new_format}, and in the case of unacceptable, just specify None as the new format?

fn_prep = [f for f in tgz_obs
if f.startswith('templates/1_prep_1_')][0]
# 3 times
self.assertTrue(fn_prep in tgz_obs)
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Why would the item continue to exist after being removed?

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because we created the tests we added more artifacts and didn't assign new file paths so we reused the same ones

| | or ``mm/dd/yyyy hh`` | |
| | or ``mm/dd/yyyy`` | |
| | or ``mm/yyyy`` | |
| ``collection_timestamp`` | ``yyyy-mm-dd hh:mm:ss`` | The time stamp (preferred) of when the sample was collected. Several format are accepted, all ISO 8601. |
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timezone or are these UTC?

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User defined? We never got to discuss this in the meetings, do you, @josenavas have a preference?

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No preference, whatever the standard says.

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Coverage Status

Coverage decreased (-0.03%) to 91.554% when pulling f4835d5 on antgonza:fix-timestamp into 53188a6 on biocore:master.

| | or ``mm/dd/yyyy hh`` | |
| | or ``mm/dd/yyyy`` | |
| | or ``mm/yyyy`` | |
| ``collection_timestamp`` | ``yyyy-mm-dd hh:mm:ss`` | The time stamp (preferred) of when the sample was collected. Several format are accepted, all ISO 8601. |
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No preference, whatever the standard says.

@wasade wasade merged commit aa68a21 into qiita-spots:master Feb 15, 2017
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4 participants