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Biocore's de novo transcriptome assembly workflow based on Nextflow
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README.md

transcriptome_assembly De Novo Transcriptome

Biocore's de novo transcriptome assembly workflow based on Nextflow

DOI License: MPL 2.0 Nextflow version Docker Build Status

Installation

sh INSTALL.sh it will check the presence of Nextflow in your path, the presence of singularity and will download the BioNextflow library and information about the tools used.

You need either Singularity or Docker to launch the pipeline.

Module Assembly

Parameters

parameter name value
pairs "PATH_to_reads/*_{1,2}.fq.gz"
email YOUREMAIL@YOURDOMAIN
minsize 50
genetic code Universal
output (output folder) output
minProtSize (minimum protein sized) 100
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