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some docs formatting
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slobentanzer committed Apr 24, 2024
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11 changes: 4 additions & 7 deletions docs/output/RDF.md
@@ -1,4 +1,4 @@
# Output to RDF
# RDF

In this section, we will learn how to use and implement the output to RDF using
the `_RDFWriter` module.
Expand All @@ -13,7 +13,9 @@ for instance, your data contain SO (Sequence ontology) terms such as
`SO:0000001`, IDs will be converted into valid URIs to allow referencing. Thus,
`SO:0000001` will be converted into `http://purl.obolibrary.org/obo/SO_0000001`.
When a node cannot be converted, a default URI will be used
(`https://biocypher.org/biocypher#<node_id>`).
(`https://biocypher.org/biocypher#<node_id>`). Running the pipeline, the
`_RDFWriter` will create a file for every node and relationship type you have
specified.

```{code-block} yaml
:caption: biocypher_config.yaml
Expand All @@ -32,8 +34,3 @@ rdf:
efo: http://www.ebi.ac.uk/efo/EFO_
```

## Output

The `_RDFWriter` will create a file for every node and relationship type you
have specified.
2 changes: 1 addition & 1 deletion docs/output/index.rst
Expand Up @@ -37,6 +37,6 @@ supported output formats are described on the following pages:

neo4j.md
arangodb.md
RDF.md
rdf.md
postgres.md
sqlite.md

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