2022.3

bioexcel · Sep 1, 2022 · 1032346 · 1032346
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diff --git a/README.md b/README.md
@@ -31,6 +31,7 @@ git clone https://github.com/bioexcel/biobb_wf_ligand_parameterization.git
 cd biobb_wf_ligand_parameterization
 conda env create -f conda_env/environment.yml
 conda activate biobb_ligand_parameterization_tutorial
+jupyter nbextension enable python-markdown/main
 jupyter-notebook biobb_wf_ligand_parameterization/notebooks/biobb_ligand_parameterization_tutorial.ipynb
 ```
 
@@ -39,7 +40,6 @@ Please execute the following commands before launching the Jupyter Notebook if y
 ```console
 jupyter-nbextension enable --py --user widgetsnbextension
 jupyter-nbextension enable --py --user nglview
-jupyter nbextension enable python-markdown/main
 ```
 
 ***

diff --git a/..._ligand_parameterization/docs/notebooks/biobb_ligand_parameterization_tutorial.docs.ipynb b/..._ligand_parameterization/docs/notebooks/biobb_ligand_parameterization_tutorial.docs.ipynb
@@ -29,6 +29,7 @@
     "cd biobb_wf_ligand_parameterization\n",
     "conda env create -f conda_env/environment.yml\n",
     "conda activate biobb_ligand_parameterization_tutorial\n",
+    "jupyter nbextension enable python-markdown/main\n",
     "jupyter-notebook biobb_wf_ligand_parameterization/notebooks/biobb_ligand_parameterization_tutorial.ipynb\n",
     "``` \n",
     "\n",
@@ -37,7 +38,6 @@
     "```console\n",
     "jupyter-nbextension enable --py --user widgetsnbextension\n",
     "jupyter-nbextension enable --py --user nglview\n",
-    "jupyter nbextension enable python-markdown/main\n",
     "```\n",
     "\n",
     "***\n",

diff --git a/biobb_wf_ligand_parameterization/docs/source/readme.md b/biobb_wf_ligand_parameterization/docs/source/readme.md
@@ -31,6 +31,7 @@ git clone https://github.com/bioexcel/biobb_wf_ligand_parameterization.git
 cd biobb_wf_ligand_parameterization
 conda env create -f conda_env/environment.yml
 conda activate biobb_ligand_parameterization_tutorial
+jupyter nbextension enable python-markdown/main
 jupyter-notebook biobb_wf_ligand_parameterization/notebooks/biobb_ligand_parameterization_tutorial.ipynb
 ```
 
@@ -39,7 +40,6 @@ Please execute the following commands before launching the Jupyter Notebook if y
 ```console
 jupyter-nbextension enable --py --user widgetsnbextension
 jupyter-nbextension enable --py --user nglview
-jupyter nbextension enable python-markdown/main
 ```
 
 ***

diff --git a/biobb_wf_ligand_parameterization/docs/source/tutorial.md b/biobb_wf_ligand_parameterization/docs/source/tutorial.md
@@ -23,6 +23,7 @@ git clone https://github.com/bioexcel/biobb_wf_ligand_parameterization.git
 cd biobb_wf_ligand_parameterization
 conda env create -f conda_env/environment.yml
 conda activate biobb_ligand_parameterization_tutorial
+jupyter nbextension enable python-markdown/main
 jupyter-notebook biobb_wf_ligand_parameterization/notebooks/biobb_ligand_parameterization_tutorial.ipynb
 ``` 
 
@@ -31,7 +32,6 @@ Please execute the following commands before launching the Jupyter Notebook if y
 ```console
 jupyter-nbextension enable --py --user widgetsnbextension
 jupyter-nbextension enable --py --user nglview
-jupyter nbextension enable python-markdown/main
 ```
 
 ***

diff --git a/biobb_wf_ligand_parameterization/html/biobb_ligand_parameterization_tutorial.web.html b/biobb_wf_ligand_parameterization/html/biobb_ligand_parameterization_tutorial.web.html
@@ -14279,15 +14279,13 @@ <h3 id="Conda-Installation-and-Launch">Conda Installation and Launch<a class="an
 <span class="go">cd biobb_wf_ligand_parameterization</span>
 <span class="go">conda env create -f conda_env/environment.yml</span>
 <span class="go">conda activate biobb_ligand_parameterization_tutorial</span>
-<span class="go">jupyter-nbextension enable --py --user widgetsnbextension</span>
-<span class="go">jupyter-nbextension enable --py --user nglview</span>
+<span class="go">jupyter nbextension enable python-markdown/main</span>
 <span class="go">jupyter-notebook biobb_wf_ligand_parameterization/notebooks/biobb_ligand_parameterization_tutorial.ipynb</span>
 </pre></div>
 <p>Please execute the following commands before launching the Jupyter Notebook if you experience some issues with widgets such as NGL View (3D molecular visualization):</p>
 <div class="highlight"><pre><span></span><span class="go">git clone https://github.com/bioexcel/biobb_wf_ligand_parameterization.git</span>
 <span class="go">jupyter-nbextension enable --py --user widgetsnbextension</span>
 <span class="go">jupyter-nbextension enable --py --user nglview</span>
-<span class="go">jupyter nbextension enable python-markdown/main</span>
 </pre></div>
 <hr>
 <h3 id="Pipeline-steps:">Pipeline steps:<a class="anchor-link" href="#Pipeline-steps:">&#182;</a></h3><ol>

diff --git a/biobb_wf_ligand_parameterization/html/biobb_ligand_parameterization_tutorial.web.ipynb b/biobb_wf_ligand_parameterization/html/biobb_ligand_parameterization_tutorial.web.ipynb
@@ -29,6 +29,7 @@
     "cd biobb_wf_ligand_parameterization\n",
     "conda env create -f conda_env/environment.yml\n",
     "conda activate biobb_ligand_parameterization_tutorial\n",
+    "jupyter nbextension enable python-markdown/main\n",
     "jupyter-notebook biobb_wf_ligand_parameterization/notebooks/biobb_ligand_parameterization_tutorial.ipynb\n",
     "``` \n",
     "\n",
@@ -37,7 +38,6 @@
     "```console\n",
     "jupyter-nbextension enable --py --user widgetsnbextension\n",
     "jupyter-nbextension enable --py --user nglview\n",
-    "jupyter nbextension enable python-markdown/main\n",
     "```\n",
     "\n",
     "***\n",

diff --git a/biobb_wf_ligand_parameterization/notebooks/biobb_ligand_parameterization_tutorial.ipynb b/biobb_wf_ligand_parameterization/notebooks/biobb_ligand_parameterization_tutorial.ipynb
@@ -29,6 +29,7 @@
     "cd biobb_wf_ligand_parameterization\n",
     "conda env create -f conda_env/environment.yml\n",
     "conda activate biobb_ligand_parameterization_tutorial\n",
+    "jupyter nbextension enable python-markdown/main\n",
     "jupyter-notebook biobb_wf_ligand_parameterization/notebooks/biobb_ligand_parameterization_tutorial.ipynb\n",
     "``` \n",
     "\n",
@@ -37,7 +38,6 @@
     "```console\n",
     "jupyter-nbextension enable --py --user widgetsnbextension\n",
     "jupyter-nbextension enable --py --user nglview\n",
-    "jupyter nbextension enable python-markdown/main\n",
     "```\n",
     "\n",
     "***\n",
@@ -419,7 +419,7 @@
  "metadata": {
   "anaconda-cloud": {},
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3.8.9 64-bit",
    "language": "python",
    "name": "python3"
   },
@@ -433,7 +433,12 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.10"
+   "version": "3.8.9"
+  },
+  "vscode": {
+   "interpreter": {
+    "hash": "31f2aee4e71d21fbe5cf8b01ff0e069b9275f58929596ceb00d14d90e3e16cd6"
+   }
   }
  },
  "nbformat": 4,