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Rebuild with frequencies
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Daniel Standage committed Aug 22, 2023
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Showing 9 changed files with 36,933 additions and 1,663 deletions.
81 changes: 53 additions & 28 deletions dbbuild/build-summary.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -182,6 +182,7 @@ Merging 'mh01WL-056' --> 'mh01WL-008'
Merging 'mh01SCUZJ-0650171' --> 'mh01WL-008'
Merging 'mh01SCUZJ-0650174' --> 'mh01WL-008'
Merging 'mh01SCUZJ-0625996' --> 'mh01WL-006'
Merging 'mh01LS-1pD' --> 'mh01WL-077'
Merging 'mh01SCUZJ-0526854' --> 'mh01WL-093'
Merging 'mh01SCUZJ-0513266' --> 'mh01USC-1qC'
Merging 'mh01WL-065' --> 'mh01WL-002'
Expand Down Expand Up @@ -247,10 +248,11 @@ Merging 'mh11WL-010' --> 'mh11SHY-001'
Merging 'mh11SCUZJ-0028689' --> 'mh11SCUZJ-0028680'
Merging 'mh11LW-29' --> 'mh11WL-024'
Merging 'mh11WL-025' --> 'mh11WL-002'
Merging 'mh11WL-032' --> 'mh11WL-015'
Merging 'mh11SCUZJ-0012491' --> 'mh11WL-004'
Merging 'mh11WL-032' --> 'mh11WL-015'
Merging 'mh11WL-031' --> 'mh11WL-005'
Merging 'mh11SCUZJ-0240124' --> 'mh11WL-005'
Merging 'mh11LS-11qB' --> 'mh11WL-005'
Merging 'mh11SCUZJ-0440636' --> 'mh11WL-001'
Merging 'mh11SCUZJ-0440638' --> 'mh11WL-001'
Merging 'mh11WL-034' --> 'mh11WL-003'
Expand All @@ -267,7 +269,9 @@ Merging 'mh12SCUZJ-0232588' --> 'mh12WL-002'
Merging 'mh12WL-016' --> 'mh12SHY-001'
Merging 'mh12WL-030' --> 'mh12SHY-001'
Merging 'mh12SCUZJ-0057315' --> 'mh12SHY-001'
Merging 'mh12LS-12pA' --> 'mh12SHY-001'
Merging 'mh12WL-041' --> 'mh12WL-048'
Merging 'mh12LS-12qE' --> 'mh12WL-048'
Merging 'mh12WL-036' --> 'mh12WL-013'
Merging 'mh12WL-029' --> 'mh12WL-013'
Merging 'mh12SCUZJ-0265690' --> 'mh12SCUZJ-0265665'
Expand Down Expand Up @@ -301,41 +305,41 @@ Merging 'mh13SHY-003' --> 'mh13KK-218'
Merging 'mh13SCUZJ-0124712' --> 'mh13KK-218'
Merging 'mh13LW-32' --> 'mh13KK-218'
Merging 'mh13SCUZJ-0176176' --> 'mh13LV-10'
Merging 'mh14SCUZJ-0178180' --> 'mh14WL-003'
Merging 'mh14SCUZJ-0109051' --> 'mh14KK-227'
Merging 'mh14LW-37' --> 'mh14KK-227'
Merging 'mh14SCUZJ-0040962' --> 'mh14SCUZJ-0040957'
Merging 'mh14WL-022' --> 'mh14WL-028'
Merging 'mh14SCUZJ-0227283' --> 'mh14WL-005'
Merging 'mh14WL-024' --> 'mh14WL-010'
Merging 'mh14WL-019' --> 'mh14WL-004'
Merging 'mh14SCUZJ-0166704' --> 'mh14WL-030'
Merging 'mh14WL-022' --> 'mh14WL-028'
Merging 'mh14WL-009' --> 'mh14SHY-002'
Merging 'mh14SCUZJ-0262293' --> 'mh14WL-043'
Merging 'mh14SCUZJ-0105353' --> 'mh14SCUZJ-0105332'
Merging 'mh14SCUZJ-0109051' --> 'mh14KK-227'
Merging 'mh14LW-37' --> 'mh14KK-227'
Merging 'mh14LW-38' --> 'mh14WL-044'
Merging 'mh14WL-001' --> 'mh14SHY-003'
Merging 'mh14WL-025' --> 'mh14SHY-003'
Merging 'mh14WL-021' --> 'mh14SHY-003'
Merging 'mh14SCUZJ-0128859' --> 'mh14SHY-003'
Merging 'mh14LW-38' --> 'mh14WL-044'
Merging 'mh14SCUZJ-0178180' --> 'mh14WL-003'
Merging 'mh14SCUZJ-0040962' --> 'mh14SCUZJ-0040957'
Merging 'mh14WL-019' --> 'mh14WL-004'
Merging 'mh14WL-026' --> 'mh14WL-036'
Merging 'mh14SCUZJ-0029353' --> 'mh14WL-036'
Merging 'mh14SCUZJ-0166704' --> 'mh14WL-030'
Merging 'mh14SCUZJ-0227283' --> 'mh14WL-005'
Merging 'mh14WL-031' --> 'mh14WL-013'
Merging 'mh14SCUZJ-0105353' --> 'mh14SCUZJ-0105332'
Merging 'mh15SCUZJ-0204763' --> 'mh15SCUZJ-0204760'
Merging 'mh15WL-021' --> 'mh15WL-015'
Merging 'mh15WL-025' --> 'mh15WL-031'
Merging 'mh15SCUZJ-0255956' --> 'mh15SCUZJ-0255931'
Merging 'mh15WL-026' --> 'mh15WL-004'
Merging 'mh15WL-023' --> 'mh15WL-004'
Merging 'mh15SCUZJ-0251800' --> 'mh15SCUZJ-0251770'
Merging 'mh15WL-024' --> 'mh15WL-001'
Merging 'mh15WL-020' --> 'mh15WL-001'
Merging 'mh15SCUZJ-0160044' --> 'mh15WL-001'
Merging 'mh15WL-021' --> 'mh15WL-015'
Merging 'mh15SCUZJ-0204763' --> 'mh15SCUZJ-0204760'
Merging 'mh15WL-025' --> 'mh15WL-031'
Merging 'mh15WL-003' --> 'mh15SHY-004'
Merging 'mh15SCUZJ-0244180' --> 'mh15SHY-004'
Merging 'mh15WL-027' --> 'mh15WL-018'
Merging 'mh15WL-026' --> 'mh15WL-004'
Merging 'mh15WL-023' --> 'mh15WL-004'
Merging 'mh15WL-043' --> 'mh15SHY-001'
Merging 'mh15SCUZJ-0075254' --> 'mh15SHY-001'
Merging 'mh15SCUZJ-0255956' --> 'mh15SCUZJ-0255931'
Merging 'mh16WL-019' --> 'mh16WL-012'
Merging 'mh16WL-024' --> 'mh16WL-010'
Merging 'mh16WL-031' --> 'mh16WL-009'
Expand All @@ -350,31 +354,32 @@ Merging 'mh16SCUZJ-0054221' --> 'mh16SCUZJ-0054196'
Merging 'mh16WL-020' --> 'mh16WL-003'
Merging 'mh16WL-004' --> 'mh16KK-011'
Merging 'mh16WL-027' --> 'mh16KK-011'
Merging 'mh17SCUZJ-0097857' --> 'mh17WL-022'
Merging 'mh17LW-43' --> 'mh17WL-022'
Merging 'mh17WL-023' --> 'mh17WL-011'
Merging 'mh17SCUZJ-0235617' --> 'mh17WL-030'
Merging 'mh17SCUZJ-0137945' --> 'mh17SCUZJ-0137941'
Merging 'mh17WL-020' --> 'mh17WL-008'
Merging 'mh17WL-017' --> 'mh17WL-008'
Merging 'mh17WL-021' --> 'mh17WL-009'
Merging 'mh17SCUZJ-0002213' --> 'mh17WL-009'
Merging 'mh17SCUZJ-0017256' --> 'mh17SCUZJ-0017214'
Merging 'mh17WL-025' --> 'mh17WL-004'
Merging 'mh17WL-028' --> 'mh17WL-015'
Merging 'mh17WL-024' --> 'mh17WL-016'
Merging 'mh17SCUZJ-0194248' --> 'mh17WL-016'
Merging 'mh17SCUZJ-0097857' --> 'mh17WL-022'
Merging 'mh17LW-43' --> 'mh17WL-022'
Merging 'mh17WL-023' --> 'mh17WL-011'
Merging 'mh17WL-025' --> 'mh17WL-004'
Merging 'mh17SCUZJ-0204850' --> 'mh17WL-031'
Merging 'mh17WL-029' --> 'mh17FHL-005'
Merging 'mh17SCUZJ-0212421' --> 'mh17FHL-005'
Merging 'mh17SCUZJ-0235617' --> 'mh17WL-030'
Merging 'mh17SCUZJ-0137945' --> 'mh17SCUZJ-0137941'
Merging 'mh17SCUZJ-0090373' --> 'mh17SCUZJ-0090327'
Merging 'mh17WL-024' --> 'mh17WL-016'
Merging 'mh17SCUZJ-0194248' --> 'mh17WL-016'
Merging 'mh18WL-015' --> 'mh18WL-009'
Merging 'mh18SCUZJ-0064744' --> 'mh18SCUZJ-0064707'
Merging 'mh18LS-18pB' --> 'mh18SCUZJ-0052717'
Merging 'mh18SCUZJ-0204360' --> 'mh18FHL-004'
Merging 'mh18SCUZJ-0020937' --> 'mh18SCUZJ-0020879'
Merging 'mh18WL-015' --> 'mh18WL-009'
Merging 'mh18WL-017' --> 'mh18WL-027'
Merging 'mh18WL-019' --> 'mh18WL-022'
Merging 'mh18WL-016' --> 'mh18WL-010'
Merging 'mh18SCUZJ-0020937' --> 'mh18SCUZJ-0020879'
Merging 'mh18SCUZJ-0091847' --> 'mh18SCUZJ-0091845'
Merging 'mh19SCUZJ-0249143' --> 'mh19SCUZJ-0249059'
Merging 'mh19WL-009' --> 'mh19USC-19qA'
Expand Down Expand Up @@ -420,6 +425,7 @@ Merging 'mh02SCUZJ-0004058' --> 'mh02SCUZJ-0004047'
Merging 'mh02SCUZJ-0506176' --> 'mh02LV-05'
Merging 'mh02WL-065' --> 'mh02WL-002'
Merging 'mh02SCUZJ-0569306' --> 'mh02WL-002'
Merging 'mh02LS-2qE' --> 'mh02WL-002'
Merging 'mh02WL-064' --> 'mh02WL-003'
Merging 'mh02SCUZJ-0662221' --> 'mh02WL-003'
Merging 'mh02WL-056' --> 'mh02WL-030'
Expand Down Expand Up @@ -517,6 +523,7 @@ Merging 'mh04SCUZJ-0635054' --> 'mh04SCUZJ-0635044'
Merging 'mh04WL-060' --> 'mh04WL-023'
Merging 'mh04WL-041' --> 'mh04WL-023'
Merging 'mh04SCUZJ-0554303' --> 'mh04WL-023'
Merging 'mh04LS-4qH' --> 'mh04WL-023'
Merging 'mh04SCUZJ-0059877' --> 'mh04SCUZJ-0059871'
Merging 'mh04WL-046' --> 'mh04WL-082'
Merging 'mh04SCUZJ-0716520' --> 'mh04WL-076'
Expand All @@ -537,6 +544,7 @@ Merging 'mh04WL-043' --> 'mh04ZHA-002'
Merging 'mh04WL-054' --> 'mh04WL-031'
Merging 'mh04SCUZJ-0160892' --> 'mh04WL-031'
Merging 'mh04SCUZJ-0160905' --> 'mh04WL-031'
Merging 'mh04LS-4qG' --> 'mh04WL-074'
Merging 'mh04WL-045' --> 'mh04WL-081'
Merging 'mh04LW-12' --> 'mh04WL-048'
Merging 'mh05WL-037' --> 'mh05WL-013'
Expand Down Expand Up @@ -602,6 +610,7 @@ Merging 'mh07SCUZJ-0208336' --> 'mh07HYP-19'
Merging 'mh07SCUZJ-0121697' --> 'mh07FHL-002'
Merging 'mh07SCUZJ-0103025' --> 'mh07SCUZJ-0102959'
Merging 'mh07WL-053' --> 'mh07WL-007'
Merging 'mh07LS-7pE' --> 'mh07ZHA-004'
Merging 'mh07WL-041' --> 'mh07WL-073'
Merging 'mh07SCUZJ-0502293' --> 'mh07SCUZJ-0502291'
Merging 'mh07WL-048' --> 'mh07WL-004'
Expand Down Expand Up @@ -1077,6 +1086,7 @@ Marker mh12WL-003 as defined in Yu2022G2 was defined previously and is redundant
Marker mh12WL-003 as defined in Yu2022G3 was defined previously and is redundant
Marker mh12WL-003 as defined in Yu2022G4 was defined previously and is redundant
Marker mh12WL-004 as defined in Yu2022G2 was defined previously and is redundant
Marker mh12WL-048 as defined in Du2023 was defined previously and is redundant
Marker mh12WL-018 as defined in Yu2022G2 was defined previously and is redundant
Marker mh12WL-005 as defined in Yu2022G2 was defined previously and is redundant
Marker mh12WL-005 as defined in Yu2022G3 was defined previously and is redundant
Expand Down Expand Up @@ -1571,6 +1581,7 @@ Marker mh11KK-040 as defined in Staadig2021 was defined previously and is redund
[Kureshi2020] mh19ZHA-007 --> mh19ZHA-007
[Kureshi2020] mh19ZHA-009 --> mh19ZHA-009
[Kureshi2020] mh04ZHA-002 --> mh04ZHA-002.v1
[Kureshi2020] mh07ZHA-004 --> mh07ZHA-004.v1
[Sun2020] mh13KK-213 --> mh13KK-213.v1
[Sun2020] mh13KK-218 --> mh13KK-218.v1
[Sun2020] mh21KK-320 --> mh21KK-320.v1
Expand Down Expand Up @@ -2661,6 +2672,8 @@ Marker mh11KK-040 as defined in Staadig2021 was defined previously and is redund
[Yu2022G3] mh09WL-023 --> mh09WL-023.v1
[Yu2022G3] mh11WL-030 --> mh11WL-030.v1
[Yu2022G3] mh14WL-028 --> mh14WL-028.v1
[Yu2022G3] mh01WL-077 --> mh01WL-077.v1
[Yu2022G3] mh04WL-074 --> mh04WL-074.v1
[Yu2022G4] mh01KK-212 --> mh01KK-212.v5
[Yu2022G4] mh01WL-003 --> mh01WL-003.v2
[Yu2022G4] mh03LV-06 --> mh03LV-06.v3
Expand Down Expand Up @@ -3002,6 +3015,7 @@ Marker mh11KK-040 as defined in Staadig2021 was defined previously and is redund
[Zhu2023] mh01WL-073 --> mh01WL-073.v2
[Zhu2023] mh08WL-045 --> mh08WL-045.v3
[Zhu2023] mh10WL-033 --> mh10WL-033.v2
[Zhu2023] mh18SCUZJ-0052717 --> mh18SCUZJ-0052717.v1
[Zhu2023] mh05WL-046 --> mh05WL-046.v2
[NimaGen2023] mh01KK-212 --> mh01KK-212.v1
[NimaGen2023] mh01WL-003 --> mh01WL-003.v1
Expand Down Expand Up @@ -3051,6 +3065,15 @@ Marker mh11KK-040 as defined in Staadig2021 was defined previously and is redund
[Zhang2023] mh14WL-044 --> mh14WL-044
[Zhang2023] mh17WL-022 --> mh17WL-022.v3
[Zhang2023] mh19USC-19qA --> mh19USC-19qA.v4
[Du2023] mh12SHY-001 --> mh12SHY-001.v4
[Du2023] mh02WL-002 --> mh02WL-002.v4
[Du2023] mh04WL-023 --> mh04WL-023.v5
[Du2023] mh11WL-005 --> mh11WL-005.v3
[Du2023] mh12WL-048 --> mh12WL-048.v1
[Du2023] mh18SCUZJ-0052717 --> mh18SCUZJ-0052717.v2
[Du2023] mh07ZHA-004 --> mh07ZHA-004.v2
[Du2023] mh01WL-077 --> mh01WL-077.v2
[Du2023] mh04WL-074 --> mh04WL-074.v2
[Hiroaki2015]
- 26 marker definitions based on 80 SNPs
- 1 population sample
Expand Down Expand Up @@ -3095,7 +3118,7 @@ Marker mh11KK-040 as defined in Staadig2021 was defined previously and is redund
- 59 marker definitions based on 658 SNPs
[Byrska-Bishop2022]
- 31 population samples
- frequencies for 57155 distinct haplotypes in 31 populations; 823181 total frequencies
- frequencies for 58139 distinct haplotypes in 31 populations; 846257 total frequencies
[Fan2022]
- 22 marker definitions based on 338 SNPs and 25 indels
[Yu2022G1]
Expand All @@ -3116,4 +3139,6 @@ Marker mh11KK-040 as defined in Staadig2021 was defined previously and is redund
- 29 marker definitions based on 244 SNPs
[Zhang2023]
- 50 marker definitions based on 243 SNPs
[Du2023]
- 191 marker definitions based on 616 SNPs

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