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Allow user to extend 5' end, 3' end, or symmetrically #72

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merged 2 commits into from
Apr 27, 2021
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Currently, when displaying markers in detail or fasta mode, if a marker is shorter than --min-length, MicroHapDB will extend the marker coordinates symmetrically to satisfy the minimum length. This PR gives the user the option to extend just the 5' end or just the 3' end instead (symmetric is still the default).

@standage standage added the enhancement New feature or request label Apr 27, 2021
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codecov-commenter commented Apr 27, 2021

Codecov Report

Merging #72 (99684e3) into master (2d6d791) will not change coverage.
The diff coverage is 100.00%.

Impacted file tree graph

@@            Coverage Diff             @@
##            master       #72    +/-   ##
==========================================
  Coverage   100.00%   100.00%            
==========================================
  Files            8        11     +3     
  Lines          220       566   +346     
  Branches        35        88    +53     
==========================================
+ Hits           220       566   +346     
Impacted Files Coverage Δ
microhapdb/cli/marker.py 100.00% <100.00%> (ø)
microhapdb/marker.py 100.00% <100.00%> (ø)
microhapdb/__init__.py 100.00% <0.00%> (ø)
microhapdb/population.py 100.00% <0.00%> (ø)

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@standage standage merged commit 1269a8f into master Apr 27, 2021
@standage standage deleted the extendmode branch April 27, 2021 19:34
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