Update satsuma_run.sh

Added instructions to change queue name for submission systems

bin/satsuma_run.sh

@@ -1,23 +1,30 @@
+#!/bin/sh
+
 # Script for starting Satsuma jobs on different job submission environments
-# Comment out the lines not required
+# One section only should be active, ie. not commented out
+
 # Usage: satsuma_run.sh <current_path> <kmatch_cmd> <ncpus> <mem> <job_id> <run_synchronously>
 # mem should be in Gb, ie. 100Gb = 100
 
-# no submission system, run process locally either synchronously or asynchronously
+# no submission system, processes are run locally either synchronously or asynchronously
 if [ "$6" -eq 1 ]; then
   eval "$2"
 else
   eval "$2" &
 fi
 
+##############################################################################################################
+## For the sections below you will need to change the queue name (QueueName) to one existing on your system ##
+##############################################################################################################
+
 # qsub (PBS systems)
-#echo "cd $1; $2" | qsub -V -qProd -l ncpus=$3,mem=$4G -N $5
+#echo "cd $1; $2" | qsub -V -qQueueName -l ncpus=$3,mem=$4G -N $5
 
 # bsub (LSF systems)
 #mem=`expr $4 + 1000`
-#bsub -o ${5}.log -J $5 -n $3 -q Prod256 -R "rusage[mem=$mem]" "$2"
+#bsub -o ${5}.log -J $5 -n $3 -q QueueName -R "rusage[mem=$mem]" "$2"
 
 # SLURM systems
 #echo "#!/bin/sh" > slurm_tmp.sh
 #echo srun $2 >> slurm_tmp.sh
-#sbatch -p tgac-long -c $3 -J $5 -o ${5}.log --mem ${4}G slurm_tmp.sh
+#sbatch -p QueueName -c $3 -J $5 -o ${5}.log --mem ${4}G slurm_tmp.sh