Some better logging, #155

biojava · Feb 19, 2015 · 6e2b8ed · 6e2b8ed
1 parent 3c7fa1b
commit 6e2b8ed
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/...ture/src/main/java/org/biojava/nbio/structure/symmetry/core/SequenceAlignmentCluster.java b/...ture/src/main/java/org/biojava/nbio/structure/symmetry/core/SequenceAlignmentCluster.java
@@ -199,7 +199,7 @@ public Object clone() {
 		try {
 			copy = (SequenceAlignmentCluster) super.clone();
 		} catch (CloneNotSupportedException e) {
-			e.printStackTrace();
+			logger.error("CloneNotSupportedException caught",e);
 		}
 		// deep copy sequences
 		copy.uniqueSequenceList = new ArrayList<UniqueSequenceList>();
@@ -249,7 +249,7 @@ private AFPChain alignPairByStructure(Atom[] ca1Seq, Atom[] ca2Seq) {
 				System.out.println(afp.toFatcat(ca1Seq, ca2Seq));
 			}
 		} catch (StructureException e) {
-			e.printStackTrace();
+			logger.error("StructureException caught",e);
 		}            
 		return afp;
 	}