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memory leak with pairwise sequence alignments #274

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andreasprlic opened this issue May 14, 2015 · 1 comment
Closed

memory leak with pairwise sequence alignments #274

andreasprlic opened this issue May 14, 2015 · 1 comment
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@andreasprlic
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bug Bugs and bugfixes
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BioJava 4.2.0

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when running a large number of pairwise sequence alignments (smith waterman) I noticed increasing memory consumption. When profiling my code I see a large number of objects from

org.biojava.nbio.alignment.routines.AlignerHelper$Last

I suspect there is a memory leak somewhere.
@andreasprlic andreasprlic added the bug Bugs and bugfixes label May 14, 2015
@andreasprlic andreasprlic added this to the BioJava 4.1.0 milestone May 14, 2015
@andreasprlic andreasprlic self-assigned this May 14, 2015
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Ali did some extensive testing and could not reproduce this any longer.

kamildoleglo pushed a commit to kamildoleglo/biojava that referenced this issue Jul 3, 2020
@semoro
Fix external references to Java enum entries
d6ba667 
Fix biojava#274
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