fixing gunicorn

README.md

@@ -16,6 +16,11 @@ to run:
 python biolink/app.py
 ```
 
+production mode:
+```
+gunicorn --bind 0.0.0.0:8888 wsgi:app
+```
+
 Then look at:
 
 http://localhost:8888/api/

biolink/api/graph/endpoints/node.py

@@ -14,7 +14,7 @@
 sg = SciGraph()
 
 @ns.route('/<id>')
-@api.doc(params={'id': 'CURIE e.g. HP_0000465'})
+@api.doc(params={'id': 'CURIE e.g. HP:0000465'})
 class SearchEntities(Resource):
 
     @api.expect(parser)

biolink/app.py

@@ -31,29 +31,31 @@
 log = logging.getLogger(__name__)
 
 
-def configure_app(flask_app):
-    flask_app.config['SERVER_NAME'] = settings.FLASK_SERVER_NAME
-    flask_app.config['SQLALCHEMY_DATABASE_URI'] = settings.SQLALCHEMY_DATABASE_URI
-    flask_app.config['SQLALCHEMY_TRACK_MODIFICATIONS'] = settings.SQLALCHEMY_TRACK_MODIFICATIONS
-    flask_app.config['SWAGGER_UI_DOC_EXPANSION'] = settings.RESTPLUS_SWAGGER_UI_DOC_EXPANSION
-    flask_app.config['RESTPLUS_VALIDATE'] = settings.RESTPLUS_VALIDATE
-    flask_app.config['RESTPLUS_MASK_SWAGGER'] = settings.RESTPLUS_MASK_SWAGGER
-    flask_app.config['ERROR_404_HELP'] = settings.RESTPLUS_ERROR_404_HELP
+#def configure_app(flask_app):
+#app.config['SERVER_NAME'] = settings.FLASK_SERVER_NAME
+app.config['SQLALCHEMY_DATABASE_URI'] = settings.SQLALCHEMY_DATABASE_URI
+app.config['SQLALCHEMY_TRACK_MODIFICATIONS'] = settings.SQLALCHEMY_TRACK_MODIFICATIONS
+app.config['SWAGGER_UI_DOC_EXPANSION'] = settings.RESTPLUS_SWAGGER_UI_DOC_EXPANSION
+app.config['RESTPLUS_VALIDATE'] = settings.RESTPLUS_VALIDATE
+app.config['RESTPLUS_MASK_SWAGGER'] = settings.RESTPLUS_MASK_SWAGGER
+app.config['ERROR_404_HELP'] = settings.RESTPLUS_ERROR_404_HELP
 
 
-def initialize_app(flask_app):
-    configure_app(flask_app)
+#def initialize_app(flask_app):
+#    configure_app(flask_app)
 
-    blueprint = Blueprint('api', __name__, url_prefix='/api')
-    api.init_app(blueprint)
-    api.add_namespace(link_search_namespace)
-    flask_app.register_blueprint(blueprint)
-
-    db.init_app(flask_app)
+blueprint = Blueprint('api', __name__, url_prefix='/api')
+api.init_app(blueprint)
+api.add_namespace(link_search_namespace)
+app.register_blueprint(blueprint)
+db.init_app(app)
 
+@app.route("/")
+def hello():
+    return "<h1 style='color:blue'>Hello There!</h1>"
 
 def main():
-    initialize_app(app)
+    #initialize_app(app)
     log.info('>>>>> Starting development server at http://{}/api/ <<<<<'.format(app.config['SERVER_NAME']))
     app.run(debug=settings.FLASK_DEBUG)
 

requirements.txt

@@ -1,9 +1,10 @@
-wheel>0.0
-flask-restplus==0.9.2
-Flask-SQLAlchemy==2.1
+pip>=9.0.1
+wheel>0.25.0
+flask-restplus>=0.9.2
+Flask-SQLAlchemy>=2.1
 flask-cors>=0.0
 pysolr>=3.6.0
 networkx>=1.11
 matplotlib>=0.0
 sparqlwrapper>0.0
-gunicorn==19.0.0
+gunicorn>=19.0.0

wsgi.py

@@ -1,12 +1,4 @@
-import sys
-from os import path as op
-
-from biolink.app import main
-
-
-APPROOT = op.abspath(op.join(op.dirname(__file__), 'base'))
-if not APPROOT in sys.path:
-    sys.path.insert(0, APPROOT)
-
-main()
+from biolink.app import app
 
+if __name__ == "__main__":
+    app.run()