Rename package, update copyright dates.

bionet · Sep 28, 2014 · cd92771 · cd92771
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diff --git a/CHANGES b/CHANGES
@@ -3,6 +3,10 @@
 Change Log
 ==========
 
+Release 0.07 - ()
+-----------------
+* Change package name to Time Encoding and Decoding Toolkit.
+
 Release 0.061 - (August 6, 2012)
 --------------------------------
 * Documentation build bugfix.

diff --git a/INSTALL b/INSTALL
@@ -6,7 +6,7 @@ Installation Instructions
 Prerequisites
 -------------
 
-The Time Encoding and Decoding Toolbox requires a relatively recent version of
+The Time Encoding and Decoding Toolkit requires a relatively recent version of
 MATLAB (e.g., R14 or later) to run.
 
 To rebuild the documentation, the following Python packages are also

diff --git a/README.rst b/README.rst
@@ -1,11 +1,11 @@
 .. -*- rst -*-
 
-Time Encoding and Decoding Toolbox
+Time Encoding and Decoding Toolkit
 ==================================
 
 Package Description
 -------------------
-The Time Encoding and Decoding Toolbox contains MATLAB implementations
+The Time Encoding and Decoding Toolkit contains MATLAB implementations
 of algorithms designed to reversibly convert digitally sampled signals
 to and from a time-domain representation consisting of a series of
 time intervals between fixed-amplitude spikes. Sample code and
@@ -33,7 +33,7 @@ The file ``utils/mtit.m`` is redistributed under the license in the file
 
 References
 ----------
-The algorithms implemented in this toolbox are described in the papers
+The algorithms implemented in this package are described in the papers
 listed in the attached BibTeX bibliography. Further research on
 time domain coding and processing may be obtained from the Bionet Group
 publication server [3]_.

diff --git a/docs/source/conf.py b/docs/source/conf.py
@@ -49,9 +49,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = '0.061'
+version = '0.07'
 # The full version, including alpha/beta/rc tags.
-release = '0.061'
+release = '0.07'
 
 print 'TED version: ', version, release
 
@@ -276,7 +276,7 @@
 #  dir menu entry, description, category)
 texinfo_documents = [
   ('index', 'TED', u'TED Documentation',
-   u'Lev Givon, Yiyin Zhou', 'TED', 'Time Encoding and Decoding Toolbox.',
+   u'Lev Givon, Yiyin Zhou', 'TED', 'Time Encoding and Decoding Toolkit.',
    'Miscellaneous'),
 ]
 

diff --git a/docs/source/index.rst b/docs/source/index.rst
@@ -3,19 +3,19 @@
    You can adapt this file completely to your liking, but it should at least
    contain the root `toctree` directive.
 
-Time Encoding and Decoding Toolbox
+Time Encoding and Decoding Toolkit
 ==================================
 
 Introduction
 ------------
-The Time Encoding and Decoding Toolbox (TED) is a library of MATLAB 
-functions and demos that implement time encoding and decoding algorithms. 
-A `Python <http://www.python.org/>`_/`PyCUDA <http://mathema.tician.de/software/pycuda/>`_ 
-implementation is also available from the Bionet Group's 
-`code repository page <http://bionet.github.io/>`_. 
-
-To get started using the toolbox, go to the :doc:`installation <install>` page and 
-try running the demos. Check out the :doc:`machines <machines>` page for a 
+The Time Encoding and Decoding Toolkit (TED) is a library of MATLAB functions 
+and demos that implement time encoding and decoding algorithms.  A `Python 
+<http://www.python.org/>`_/`PyCUDA <http://mathema.tician.de/software/pycuda/>`_ 
+implementation is also available from the Bionet Group's `code repository page 
+<http://bionet.github.io/>`_. 
+
+To get started using the toolkit, go to the :doc:`installation <install>` page 
+and try running the demos. Check out the :doc:`machines <machines>` page for a 
 high-level description of the time encoding and decoding routines included in
 the toolbox.
 

diff --git a/docs/source/machines.rst b/docs/source/machines.rst
@@ -3,7 +3,7 @@
 Time Encoding and Decoding Machines
 ===================================
 
-The TED Toolbox provides implementations of a range of time encoding
+The TED Toolkit provides implementations of a range of time encoding
 and decoding machines. Brief descriptions of these machines are
 provided in the following pages, along with links to the relevant
 articles that describe them in more detail and documentation

diff --git a/docs/source/publications.rst b/docs/source/publications.rst
@@ -3,7 +3,7 @@
 Publications
 ============
 
-The Time Encoding and Decoding Toolbox implements algorithms from the following
+The Time Encoding and Decoding Toolkit implements algorithms from the following
 publications:
 
 |lazar_time_2004|_ A.A. Lazar, **Time Encoding with an Integrate-and-Fire

diff --git a/ted/Contents.m b/ted/Contents.m
@@ -1,4 +1,4 @@
-% Time Encoding and Decoding Toolbox
+% Time Encoding and Decoding Toolkit
 %
 % Asynchronous Sigma-Delta Modulator Algorithms
 %   asdm_decode                  - ASDM time decoder.
@@ -36,4 +36,4 @@
 % See also TEDDEMOS
 
 % Author: Lev Givon
-% Copyright 2009-2012 Lev Givon
+% Copyright 2009-2014 Lev Givon
diff --git a/ted/G_block_delay.m b/ted/G_block_delay.m
@@ -6,7 +6,7 @@
 %   j, respectively; D1 and D2 contain the delays of neurons i and j.
 
 %   Author: Eftychios A. Pnevmatikakis
-%   Copyright 2009-2012 Eftychios A. Pnevmatikakis
+%   Copyright 2009-2014 Eftychios A. Pnevmatikakis
 
 function G = G_block_delay(tk1,tk2,d1,d2,W,dt)
 

diff --git a/ted/LIF_decode_S1.m b/ted/LIF_decode_S1.m
@@ -21,7 +21,7 @@
 %         function for a different choice of the smoothing parameter  
 %
 % Author: Eftychios A. Pnevmatikakis
-% Copyright 2009-2012 Eftychios A. Pnevmatikakis
+% Copyright 2009-2014 Eftychios A. Pnevmatikakis
 
 t = [0:dt:dur];
 RC = R*C;

diff --git a/ted/LIF_decode_S2.m b/ted/LIF_decode_S2.m
@@ -22,7 +22,7 @@
 %         function for a different choice of the smoothing parameter  
 %
 % Author: Eftychios A. Pnevmatikakis
-% Copyright 2009-2012 Eftychios A. Pnevmatikakis
+% Copyright 2009-2014 Eftychios A. Pnevmatikakis
 
 t = [0:dt:dur];
 RC = R*C;

diff --git a/ted/LIF_pop_decode_S1.m b/ted/LIF_pop_decode_S1.m
@@ -25,7 +25,7 @@
 %         function for a different choice of the smoothing parameter  
 %
 % Author: Eftychios A. Pnevmatikakis
-% Copyright 2009-2012 Eftychios A. Pnevmatikakis
+% Copyright 2009-2014 Eftychios A. Pnevmatikakis
 
 t = [0:dt:dur];
 RC = R.*C;

diff --git a/ted/LIF_pop_decode_S2.m b/ted/LIF_pop_decode_S2.m
@@ -24,7 +24,7 @@
 %         function for a different choice of the smoothing parameter              
 %
 % Author: Eftychios A. Pnevmatikakis
-% Copyright 2009-2012 Eftychios A. Pnevmatikakis
+% Copyright 2009-2014 Eftychios A. Pnevmatikakis
 
 t = [0:dt:dur];
 RC = R.*C;

diff --git a/ted/asdm_decode.m b/ted/asdm_decode.m
@@ -6,7 +6,7 @@
 %   recovered signal is assumed to be sampled at sampling rate 1/DT Hz.
 
 %   Author: Lev Givon
-%   Copyright 2009-2012 Lev Givon
+%   Copyright 2009-2014 Lev Givon
 
 function u_rec = asdm_decode(s,dur,dt,bw,b,d,k)
 

diff --git a/ted/asdm_decode_fast.m b/ted/asdm_decode_fast.m
@@ -8,7 +8,7 @@
 %   specifies the number of bins used by this algorithm.
 
 %   Author: Lev Givon
-%   Copyright 2009-2012 Lev Givon
+%   Copyright 2009-2014 Lev Givon
 
 function u_rec = asdm_decode_fast(s,dur,dt,bw,M,b,d,k)
 

diff --git a/ted/asdm_decode_ins.m b/ted/asdm_decode_ins.m
@@ -10,7 +10,7 @@
 %   the encoded signal.
 
 %   Author: Lev Givon
-%   Copyright 2009-2012 Lev Givon
+%   Copyright 2009-2014 Lev Givon
 
 function u_rec = asdm_decode_ins(s,dur,dt,bw,b)
 

diff --git a/ted/asdm_decode_pop.m b/ted/asdm_decode_pop.m
@@ -12,7 +12,7 @@
 %   differ from the number contributed by other neurons.
 
 %   Author: Lev Givon
-%   Copyright 2009-2012 Lev Givon
+%   Copyright 2009-2014 Lev Givon
 
 function u_rec = asdm_decode_pop(s_list,dur,dt,bw,b_list,d_list, ...
                                  k_list)

diff --git a/ted/asdm_decode_pop_ins.m b/ted/asdm_decode_pop_ins.m
@@ -12,7 +12,7 @@
 %   neuron may differ from the number contributed by other neurons.
 
 %   Author: Lev Givon
-%   Copyright 2009-2012 Lev Givon
+%   Copyright 2009-2014 Lev Givon
 
 function u_rec = asdm_decode_pop_ins(s_list,dur,dt,bw,b_list)
 

diff --git a/ted/asdm_encode.m b/ted/asdm_encode.m
@@ -19,7 +19,7 @@
 %   integrator at the conclusion of processing U.
 
 %   Author: Lev Givon
-%   Copyright 2009-2012 Lev Givon
+%   Copyright 2009-2014 Lev Givon
 
 function [varargout] = asdm_encode(u,dt,b,d,varargin)
 

diff --git a/ted/asdm_recoverable.m b/ted/asdm_recoverable.m
@@ -6,7 +6,7 @@
 %   that described in most of Prof. Lazar's papers.
 
 %   Author: Lev Givon
-%   Copyright 2009-2012 Lev Givon
+%   Copyright 2009-2014 Lev Givon
 
 function result = asdm_recoverable(u,bw,b,d,k)
 

diff --git a/ted/asdm_recoverable_strict.m b/ted/asdm_recoverable_strict.m
@@ -4,7 +4,7 @@
 %   threshold D, bias B, and bandwidth BW (in rad/s).
 
 %   Author: Lev Givon
-%   Copyright 2009-2012 Lev Givon
+%   Copyright 2009-2014 Lev Givon
 
 function result = asdm_recoverable_strict(u,bw,b,d,k)
 

diff --git a/ted/consistent_decoding_IF_MIMO.m b/ted/consistent_decoding_IF_MIMO.m
@@ -13,7 +13,7 @@
 %   references.
 
 %   Author: Eftychios A. Pnevmatikakis
-%   Copyright 2009-2012 Eftychios A. Pnevmatikakis
+%   Copyright 2009-2014 Eftychios A. Pnevmatikakis
 
 function u_rec = consistent_decoding_IF_MIMO(TK,LN,t,b,d,C,N,M,delay,scale)
 

diff --git a/ted/consistent_decoding_IF_ONOFF.m b/ted/consistent_decoding_IF_ONOFF.m
@@ -10,7 +10,7 @@
 %   references. 
 
 %   Author: Eftychios A. Pnevmatikakis
-%   Copyright 2009-2012 Eftychios A. Pnevmatikakis
+%   Copyright 2009-2014 Eftychios A. Pnevmatikakis
 
 function u_rec = consistent_decoding_IF_ONOFF(tk1, tk2, t, b, d, C, tauf, scale)
 

diff --git a/ted/consistent_decoding_LIF.m b/ted/consistent_decoding_LIF.m
@@ -8,7 +8,7 @@
 %   the Consistent Recovery paper mentioned in the toolbox references.
 
 %   Author: Eftychios A. Pnevmatikakis
-%   Copyright 2009-2012 Eftychios A. Pnevmatikakis
+%   Copyright 2009-2014 Eftychios A. Pnevmatikakis
 function u_rec = consistent_decoding_LIF(tk,t,b,d,R,C)
 
 ln = length(tk)-1;

diff --git a/ted/iaf_decode.m b/ted/iaf_decode.m
@@ -11,7 +11,7 @@
 %   specified.
 
 %   Author: Lev Givon
-%   Copyright 2009-2012 Lev Givon
+%   Copyright 2009-2014 Lev Givon
 
 function u_rec = iaf_decode(s,dur,dt,bw,b,d,varargin)
 

diff --git a/ted/iaf_decode_fast.m b/ted/iaf_decode_fast.m
@@ -12,7 +12,7 @@
 %   specified.
 
 %   Author: Lev Givon
-%   Copyright 2009-2012 Lev Givon
+%   Copyright 2009-2014 Lev Givon
 
 function u_rec = iaf_decode_fast(s,dur,dt,bw,M,b,d,varargin)
 

diff --git a/ted/iaf_decode_filt_trig_pop.m b/ted/iaf_decode_filt_trig_pop.m
@@ -18,7 +18,7 @@
 %   used. The capacitances are all assumed to be 1 if not specified.
 
 %   Author: Lev Givon
-%   Copyright 2009-2012 Lev Givon
+%   Copyright 2009-2014 Lev Givon
 
 function u_rec = iaf_decode_filt_trig_pop(s,dur,dt,Omega,M,b,d,varargin)
 

diff --git a/ted/iaf_decode_pop.m b/ted/iaf_decode_pop.m
@@ -11,7 +11,7 @@
 %   differ from the number contributed by other neurons.
 
 %   Author: Lev Givon
-%   Copyright 2009-2012 Lev Givon
+%   Copyright 2009-2014 Lev Givon
 
 function u_rec = iaf_decode_pop(s_list,dur,dt,bw,b_list,d_list, ...
                                 R_list,C_list)

diff --git a/ted/iaf_decode_pop_delay.m b/ted/iaf_decode_pop_delay.m
@@ -9,7 +9,7 @@
 %   sampled at sampling rate 1/DT Hz. 
 
 %   Author: Eftychios A. Pnevmatikakis
-%   Copyright 2009-2012 Eftychios A. Pnevmatikakis
+%   Copyright 2009-2014 Eftychios A. Pnevmatikakis
 
 function u_rec = iaf_decode_pop_delay(TK,LN,t,W,b,d,kd,G,N,delay,dt)
 

diff --git a/ted/iaf_encode.m b/ted/iaf_encode.m
@@ -21,7 +21,7 @@
 %   the last emitted spike.
 
 %   Author: Lev Givon
-%   Copyright 2009-2012 Lev Givon
+%   Copyright 2009-2014 Lev Givon
 
 function [varargout] = iaf_encode(u,dt,b,d,varargin)
 

diff --git a/ted/iaf_encode_ideal_on_off.m b/ted/iaf_encode_ideal_on_off.m
@@ -9,7 +9,7 @@
 %   of the Consistent Recovery paper mentioned in the toolbox references.
 
 %   Author: Eftychios A. Pnevmatikakis
-%   Copyright 2009-2012 Eftychios A. Pnevmatikakis
+%   Copyright 2009-2014 Eftychios A. Pnevmatikakis
 
 function [tk1 tk2]  = iaf_encode_ideal_on_off(u,t,b,d,k,tauf,scale)
 

diff --git a/ted/iaf_recoverable.m b/ted/iaf_recoverable.m
@@ -4,7 +4,7 @@
 %   resistance R, capacitance C, and bandwidth W (in rad/s).
 %
 %   Author: Lev Givon
-%   Copyright 2009-2012 Lev Givon
+%   Copyright 2009-2014 Lev Givon
 
 function res = iaf_recoverable(u,W,b,d,R,C)
 

diff --git a/teddemos/Contents.m b/teddemos/Contents.m
@@ -38,4 +38,4 @@
 % See also TED
 
 % Author: Lev Givon
-% Copyright 2009-2012 Lev Givon
+% Copyright 2009-2014 Lev Givon
diff --git a/teddemos/asdm_demo.m b/teddemos/asdm_demo.m
@@ -71,4 +71,4 @@
 %%
 % _Author: Lev Givon_
 %%
-% _Copyright 2009-2012 Lev Givon_
+% _Copyright 2009-2014 Lev Givon_
diff --git a/teddemos/asdm_pop_demo.m b/teddemos/asdm_pop_demo.m
@@ -77,4 +77,4 @@
 %%
 % _Author: Lev Givon_
 %%
-% _Copyright 2009-2012 Lev Givon_
+% _Copyright 2009-2014 Lev Givon_
diff --git a/teddemos/delay_demo.m b/teddemos/delay_demo.m
@@ -201,4 +201,4 @@
 %%
 % _Author: Eftychios A. Pnevmatikakis_
 %%
-% _Copyright 2009-2012 Lev Givon_
+% _Copyright 2009-2014 Lev Givon_
diff --git a/teddemos/demos.xml b/teddemos/demos.xml
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="utf-8"?>
 <demos>
 
-<name>Time Encoding and Decoding Toolbox - Demos</name>
+<name>Time Encoding and Decoding Toolkit - Demos</name>
 <type>toolbox</type>
 <icon>$toolbox/matlab/icons/matlabicon.gif</icon>
 <description>Programs that demonstrate how to use the
-  Time Encoding and Decoding Toolbox.</description>
+  Time Encoding and Decoding Toolkit.</description>
 
 <website></website>
 

diff --git a/teddemos/gammatone_audio_demo.m b/teddemos/gammatone_audio_demo.m
@@ -73,4 +73,4 @@
 %%
 % _Author: Lev Givon_
 %%
-% _Copyright 2009-2012 Lev Givon_
+% _Copyright 2009-2014 Lev Givon_
diff --git a/teddemos/gammatone_audio_stitch_demo.m b/teddemos/gammatone_audio_stitch_demo.m
@@ -113,5 +113,5 @@
 %%
 % _Author: Lev Givon_
 %%
-% _Copyright 2009-2012 Lev Givon_
+% _Copyright 2009-2014 Lev Givon_
 
diff --git a/teddemos/gammatone_demo.m b/teddemos/gammatone_demo.m
@@ -227,4 +227,4 @@
 %%
 % _Authors: Eftychios A. Pnevmatikakis and Robert J. Turetsky_
 %%
-% _Copyright 2009-2012 Eftychios A. Pnevmatikakis and Robert J. Turetsky_
+% _Copyright 2009-2014 Eftychios A. Pnevmatikakis and Robert J. Turetsky_