Get a sequence from a Genbank ID #3
Closed
Comments
It isn't possible yet. "assembly" and "SRA" are the only supported NCBI sections at the moment. Following "assembly" and "SRA" I imagine the syntax to get a sequence would be like bionode-ncbi download nucleotide AF068820.2 and ncbi.download('nucleotide', 'AF068820.2') perhaps? Search and download in this case would be somewhat redundant given a unique Genbank ID, search would return with just one result. |
We can add this using efetch (http://www.ncbi.nlm.nih.gov/books/NBK25499/). |
Right there would only be download. Also, pagination. I know the NCBI API has support for this. ncbi.download('nucleotide', ['AF068820.2', ...]) |
Moving discussion to #10 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Is it possible to get a single sequence given a Genbank ID?
I tried:
Which returns nothing.
If not, this would be useful😸
The text was updated successfully, but these errors were encountered: