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tweaked for accuracy
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svn path=/bioperl-db/trunk/; revision=600
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sendu committed Dec 6, 2006
1 parent e60679c commit e7b23fa
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Showing 2 changed files with 13 additions and 12 deletions.
4 changes: 3 additions & 1 deletion Changes
@@ -1,5 +1,8 @@
Revision history for bioperl-db.

Full details of changes between all versions are available online at:
http://www.bioperl.org/wiki/Change_log

1.5.2
-----
Released with bioperl-1.5.2 developer branch release
Expand All @@ -9,7 +12,6 @@ instead of Makefile.PL

Compatability with bioperl-1.5.2 changes such as the new Bio::Species


0.01
----
Ewan Birney's code committed to handle a simple relation schema
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21 changes: 10 additions & 11 deletions INSTALL
Expand Up @@ -7,7 +7,6 @@ INSTALL THE RIGHT BIOPERL
You need at least the corresponding version of Bioperl. Since this
is bioperl-db 1.5.2, you will need bioperl 1.5.2.


INSTALL BIOSQL

The bioperl-db package is designed to work with the BioSQL database.
Expand All @@ -23,10 +22,9 @@ To install using CPAN you will need a recent version (v1.8802 has
been tested) of it and your prefer_installer conf set to 'MB':

>cpan
cpan> o conf init prefer_installer
Choose 'MB'.
cpan> o conf commit
cpan> q
cpan>o conf prefer_installer MB
cpan>o conf commit
cpan>q

Ensure that you have installed BioSQL properly prior to attempting
an installation. You will also probably need root privileges.
Expand Down Expand Up @@ -68,9 +66,7 @@ Download the bioperl-db archive, then extract its contents. Example:

where <release-version> is the current release.

Copy or rename t/DBHarness.conf.example to t/DBHarness.biosql.conf
and edit the file as needed. Then issue the following command from
within bioperl-db/:
Issue the following command from within bioperl-db/:

>perl Build.PL

Expand All @@ -80,9 +76,9 @@ following commands:
>./Build test
>./Build install

NOTE: bioperl-db tests require that the BioSQL database in
DBHarness.biosql.conf does NOT have NCBI taxonomy loaded. Also,
the './Build install' step may require that you have root privileges.
NOTE: bioperl-db tests require that the BioSQL database you configure
does NOT have NCBI taxonomy loaded. Also, the './Build install' step
may require that you have root privileges.


INSTALLING bioperl-db ON WINDOWS
Expand All @@ -92,6 +88,9 @@ instructions on how to install bioperl-db on Windows:

http://www.bioperl.org/wiki/Installing_Bioperl_on_Windows

(the instructions are aimed at bioperl-core, but apply
equally to bioperl-db)


LOAD THE NCBI TAXONOMY

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