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PAML parse_seqs misses the first sequence in the mlc file #135

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cjfields opened this issue Oct 7, 2015 · 2 comments
Open

PAML parse_seqs misses the first sequence in the mlc file #135

cjfields opened this issue Oct 7, 2015 · 2 comments
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cjfields commented Oct 7, 2015

Author Name: Daisie Huang (@daisieh)
Original Redmine Issue: 3365, https://redmine.open-bio.org/issues/3365
Original Date: 2012-06-15
Original Assignee: Bioperl Guts

PAML parse_seqs doesn’t get called until after the first sequence has already been read in, meaning that the first sequence gets dropped from the otus array.
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cjfields commented Oct 7, 2015

Original Redmine Comment
Author Name: Daisie Huang
Original Date: 2012-06-18T19:03:47Z

This test script should run correctly after the patch.

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cjfields commented Oct 7, 2015

Original Redmine Comment
Author Name: Daisie Huang
Original Date: 2012-06-18T19:12:16Z

Oops, wrong version of test script.

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