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Bio/SeqIO/excel.pm: move to another repo with same name.
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Remove this into another repo named Bio-SeqIO-excel to be released
on its own, in a distribution with the same name.

This drops BioPerl dependency on Spreadsheet-ParseExcel.
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carandraug committed Sep 11, 2018
1 parent 7f35dba commit 3b472d6
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313 changes: 0 additions & 313 deletions Bio/SeqIO/excel.pm

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4 changes: 4 additions & 0 deletions Changes
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Expand Up @@ -77,6 +77,10 @@ be removed.
distribution named Bio-TreeIO-svggraph. This also means that
BioPerl is no longer dependent on SVG-Graph and Tree-DAG_Node.

* The module Bio::SeqIO::excel has been moved to a separate
distribution named Bio-SeqIO-excel. This also means that
BioPerl is no longer dependent on Spreadsheet-ParseExcel.


1.7.2 - "Entebbe"

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30 changes: 0 additions & 30 deletions t/SeqIO/excel.t

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20 changes: 1 addition & 19 deletions t/SeqIO/table.t
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Expand Up @@ -6,7 +6,7 @@ BEGIN {
use lib '.';
use Bio::Root::Test;

test_begin(-tests => 463,
test_begin(-tests => 351,
-requires_module => 'IO::Scalar');

use_ok('Bio::Tools::CodonTable');
Expand Down Expand Up @@ -114,24 +114,6 @@ my $seqout = Bio::SeqIO->new( -format => 'table', -file => ">$tmpfile" );
# dies_ok not available
# dies_ok { $seqout->write_seq($seq) } "write_seq() not implemented";

# Need Spreadsheet::ParseExcel installed for testing Excel format
SKIP: {
test_skip(-tests => 112, -requires_module => 'Spreadsheet::ParseExcel');

ok $seqin = Bio::SeqIO->new(-file => test_input_file("test.xls"),
-format => 'excel',
-species => "Homo sapiens",
-header => 1,
-display_id => 1,
-accession_number => 2,
-seq => 7,
-annotation => 1,
-trim => 1);
run_tests([@names],[@accs],[@num_anns],[@psg],[@rs]);

$seqin->close();
}

sub run_tests {
my ($names_,$accs_,$num_anns_,$psg_,$rs_) = @_;

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