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Bio::DB::RefSeq, Bio::DB::EMBL, and subclasses of Bio::DB::NCBIHelper…
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… split out

These have been moved out into three separate distributions.
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carandraug committed Sep 28, 2018
1 parent 9bccd12 commit fde603f
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Showing 25 changed files with 126 additions and 4,075 deletions.
11 changes: 11 additions & 0 deletions Changes
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Expand Up @@ -52,6 +52,8 @@ be removed.
Bio::ClusterIO
Bio::ClusterIO::*
Bio::DB::CUTG
Bio::DB::EMBL
Bio::DB::EntrezGene
Bio::DB::Expression
Bio::DB::Expression::geo
Bio::DB::GFF
Expand All @@ -64,8 +66,14 @@ be removed.
Bio::DB::GFF::RelSegment
Bio::DB::GFF::Segment
Bio::DB::GFF::Typename
Bio::DB::GenBank
Bio::DB::GenPept
Bio::DB::NCBIHelper
Bio::DB::Query::GenBank
Bio::DB::RefSeq
Bio::DB::SeqFeature
Bio::DB::SeqFeature::*
Bio::DB::Taxonomy::entrez
Bio::DB::Taxonomy::sqlite
Bio::Index::Stockholm
Bio::LiveSeq::*
Expand All @@ -90,6 +98,7 @@ be removed.

bp_bulk_load_gff
bp_das_server
bp_download_query_genbank
bp_fast_load_gff
bp_flanks
bp_genbank2gff
Expand All @@ -98,6 +107,7 @@ be removed.
bp_meta_gff
bp_netinstall
bp_process_wormbase
bp_query_entrez_taxa
bp_seqfeature_delete
bp_seqfeature_gff3
bp_seqfeature_load
Expand All @@ -110,6 +120,7 @@ be removed.
MIME::Base64
Memoize
Text::ParseWords
URI::Escape

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129 changes: 0 additions & 129 deletions bin/bp_download_query_genbank

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81 changes: 0 additions & 81 deletions bin/bp_query_entrez_taxa

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