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Update %FTQUAL_NO_QUOTE: List of qualifiers without quote. #339

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merged 1 commit into from
Oct 3, 2020

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hdevillers
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I propose a little update of the list of qualifiers whose values do not require quote in EMBL and GB. I have just checked INSDC rules (http://www.insdc.org/documents/feature-table) and add 4 qualifiers (compare, estimated_length, rpt_unit_range and tag_peptide) in %FTQUAL_NO_QUOTE hash in embl.pm, embldriver.pm, genbank.pm and gbdriver.pm modules.

Note that 6 qualifiers are no longer defined in INSDC rules (codon, cons_splice, evidence, label, rpt_unit, usedin) but I kept then to limit impact in former scripts.

@cjfields cjfields merged commit d98d5ad into bioperl:master Oct 3, 2020
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cjfields commented Oct 3, 2020

Awesome, thanks for the updates to this!

cjfields added a commit that referenced this pull request Feb 3, 2021
    * Bio::SeqIO::interpro has been moved to a separate repository to
      deal with issues with XML::DOM::XPath bitrot [#347]
    * Pull requests:
      * Adjust Swiss-Prot FT A..B lines [#348] from @smoe
      * Update %FTQUAL_NO_QUOTE: List of qualifiers without quote [#339] from
        @hdevillers
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2 participants