Bp genbank ref extractor #25
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
|
Do Carne's pull/merge request. |
|
Did it, thank you Carn. BIO On Sep 28, 2011, at 7:59 AM, Carn Draug wrote:
|
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Hi
I made a few more changes to the script. I changed the assembly regex default for something more useful, and added the assembly used to the exported data.
To prevent failing of the script when export data was not necessary, I was using require instead of use to load the modules. This was being done near the end of the program when they were needed. It occurred to me yesterday that this will cause the program to fail only at the end so I moved it to the section where options are parsed, to return the error as soon as it is possible to predict it.
I fixed all documentation accordingly.
Carnë