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Commits on Jun 13, 2003

• MAGEified MAAS 5.0 txt file parser

  

  crsto

  committedJun 13, 2003
  293f11b

Commits on Jun 11, 2003

• updated dchipxls.pm to reflect MAGE renamings for ::Affy modules

  

  crsto

  committedJun 11, 2003
  29ceab2

• updated affymetrix.pm to reflect MAGE renamings

  

  crsto

  committedJun 11, 2003
  88947a5

• New renamed Microarray::Affymetrix modules based on MAGE conventions:

  

  crsto

  committedJun 11, 2003
  bbf493c

• adding crsto's MAS5 parser

  

  allenday

  committedJun 11, 2003
  3a774e0

Commits on Jun 3, 2003

• adding data files. big!

  

  allenday

  committedJun 3, 2003
  d4493c5

• adding affy mas5 parser.

  

  allenday

  committedJun 3, 2003
  9ebae85

Commits on May 19, 2003

• cel file fix for honxian@pcbi.upenn.edu

  

  allenday

  committedMay 19, 2003
  9143ac0

Commits on Jan 29, 2003

• forgotten commits

  

  allenday

  committedJan 29, 2003
  f444971

Commits on Jan 27, 2003

• *** empty log message ***

  

  allenday

  committedJan 27, 2003
  8e19d83

Commits on Nov 8, 2002

• array.pm had been a bio::root::io.. why?? fixed. adding changes to allow construction of an Array object from

  

  allenday

  committedNov 8, 2002
  f4aab68

Commits on Nov 5, 2002

• next_array() was crufty, cleaner now. adding a test script to show it can

  

  allenday

  committedNov 5, 2002
  49c58d2

Commits on Nov 4, 2002

• stray debug statements commented/removed

  

  allenday

  committedNov 4, 2002
  c8a0b48

• manifest, files about spotless features

  

  allenday

  committedNov 4, 2002
  e9f3d2d

• moving input files

  

  allenday

  committedNov 4, 2002
  301a048

• some spots on an affy array don't belong to any feature/featureset. now

  

  allenday

  committedNov 4, 2002
  3024759

Commits on Oct 31, 2002

• cleaning up the interface classes, some doc fixes

  

  allenday

  committedOct 31, 2002
  4ed3125

Commits on Oct 16, 2002

• placeholder for reading dChip tab-delimitted files.

  

  allenday

  committedOct 16, 2002
  4f79797

• mass renaming for MGED

  

  allenday

  committedOct 16, 2002
  f949dfa

Commits on Oct 11, 2002

• added a test driver

  

  allenday

  committedOct 11, 2002
  e7fbe5a

• except for parsing the DatHeader and other lines from the CEL (Data) file,

  

  allenday

  committedOct 11, 2002
  445ce9f

• using new changes to Bio::Root::IO to check filehandle mode.

  

  allenday

  committedOct 11, 2002
  ac57aa9

Commits on Oct 8, 2002

• doc changes, moving more methods around to the appropriate level in

  

  allenday

  committedOct 8, 2002
  34531c3

• Adding a layer of inheritance for Microarray::ProbeI from

  

  allenday

  committedOct 8, 2002
  226327b

• adding some new interface classes to formalize relationships.

  

  allenday

  committedOct 8, 2002
  7993671

• *** empty log message ***

  

  allenday

  committedOct 8, 2002
  51f214c

• it can now read/write affy files using MicroarrayIO

  

  allenday

  committedOct 8, 2002
  648ee92

• old files

  

  allenday

  committedOct 8, 2002
  e9e0609

Commits on Oct 2, 2002

• it works now, still a bit slow, but using much less memory than before. almost down to the

  

  allenday

  committedOct 2, 2002
  3548806

Commits on Oct 1, 2002

• not sure if it is totally working, just want to check it in to sync my

  

  allenday

  committedOct 1, 2002
  38e8e55

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