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Update OBO in OWL #973

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merged 3 commits into from Nov 16, 2023
Merged

Update OBO in OWL #973

merged 3 commits into from Nov 16, 2023

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cthoyt
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@cthoyt cthoyt commented Nov 2, 2023

This PR updates the OBO in OWL record (see current record at https://bioregistry.io/oboinowl) in the following ways:

  1. Uses pseudo-PURLs for OBO and OWL download that correspond to the URIs
  2. Add @kltm as the contact person. There's still some ambiguity as to how this file is maintained, but since the URIs point to the GO repo, I think this is probably a good call for now
  3. Adds a loose pattern
  4. Adds additional examples

@matentzn @kltm I would love to have one of you contribute a more detailed description

See related recent discussions:

  1. OBO in OWL files are inconsistent geneontology/go-site#2157
  2. All synonym types defined as oboInOwl:SynonymType but historically they're defined as oboInOwl:SynonymTypeProperty information-artifact-ontology/ontology-metadata#157

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codecov bot commented Nov 2, 2023

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (04a19ae) 40.93% compared to head (ff6cad0) 40.93%.
Report is 1 commits behind head on main.

❗ Current head ff6cad0 differs from pull request most recent head 1a88bb0. Consider uploading reports for the commit 1a88bb0 to get more accurate results

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #973   +/-   ##
=======================================
  Coverage   40.93%   40.93%           
=======================================
  Files         138      138           
  Lines        7905     7905           
  Branches     1841     1841           
=======================================
  Hits         3236     3236           
  Misses       4467     4467           
  Partials      202      202           

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@kltm
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kltm commented Nov 3, 2023

I would defer to @cmungall and @balhoff here.

@cthoyt cthoyt merged commit c654398 into main Nov 16, 2023
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@cthoyt cthoyt deleted the update-oio branch November 16, 2023 10:53
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3 participants