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Biopython 1.65 adds parsing of GCG MSF format
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See biopython/biopython#2306
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@peterjc
peterjc committed Nov 5, 2019
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Expand Up @@ -64,6 +64,7 @@ The format name is a simple lowercase string, matching the names used in
| ig | 1.47 | No | The refers to the IntelliGenetics file format often used for ordinary un-aligned sequences. The tool MASE also appears to use the same file format for alignments, hence its inclusion in this table. See [MASE format](http://bioperl.org/formats/alignment_formats/ClustalW_multiple_alignment_format.html "wikilink"). |
| maf | 1.69 | 1.69 | [Multiple Alignment Format (MAF)](Multiple_Alignment_Format "wikilink") produced by Multiz. Used to store whole-genome alignments, such as the 30-way alignments available from the UCSC genome browser. |
| mauve | 1.70 | 1.70 | [Mauve's eXtended Multi-FastA (XMFA)](http://darlinglab.org/mauve/user-guide/files.html) file format |
| msf | 1.75 | No | GCG MSF file format. |
| nexus | 1.46 | 1.48 | Also known as PAUP format. Uses Bio.Nexus internally. Only one alignment per file is supported. |
| phylip | 1.46 | 1.46 | This is a strict interpretation of the interlaced PHYLIP format which truncates names at 10 characters. |
| phylip-sequential | 1.59 | 1.59 | This is a strict interpretation of the sequential PHYLIP format which truncates names at 10 characters. |
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