AlignIO #47

tiagoantao opened this Issue Apr 22, 2016 · 2 comments


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I have tried to clean AlignIO but it needs some (minor) love from a module specialist:

  • the PFAM database is no more
  • one bugzilla reference
lennax commented Apr 22, 2016

The bug link is here:

PFAM has moved here:
But the linked alignment is "dead":
And the new family is
The seed alignment now has 75 sequences. I'd recommend switching to RP15 because it only has 17 sequences.

I also noticed there is a rendered backslash in PF09395\_seed.sth (in the paragraph right above the alignment example code).

@peterjc peterjc added a commit that referenced this issue Apr 29, 2016
@peterjc peterjc Update bug URL (bugzilla --> redmine)
Thank you @lennax, noted on #47
peterjc commented Apr 29, 2016

I've fixed some of this, but @lennax is right - the example I choose could be replaced with something smaller like RP15.

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