I have tried to clean AlignIO but it needs some (minor) love from a module specialist:
The bug link is here: https://redmine.open-bio.org/issues/2557
PFAM has moved here: http://pfam.xfam.org/
But the linked alignment is "dead": http://pfam.xfam.org/family/PF09395
And the new family is http://pfam.xfam.org/family/PF08702
The seed alignment now has 75 sequences. I'd recommend switching to RP15 because it only has 17 sequences.
I also noticed there is a rendered backslash in PF09395\_seed.sth (in the paragraph right above the alignment example code).
Print functions and back-tick markup for AlignIO page etc
Update bug URL (bugzilla --> redmine)
Thank you @lennax, noted on #47
I've fixed some of this, but @lennax is right - the example I choose could be replaced with something smaller like RP15.