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# Program: matcher
# Rundate: Tue 8 Dec 2009 11:48:35
# Commandline: matcher
# [-asequence] rose.pro
# [-bsequence] rosemary.pro
# [-outfile] matcher_simple.txt
# -auto
# -sprotein
# -aformat simple
# Align_format: simple
# Report_file: matcher_simple.txt
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: AF069992_1
# 2: CAA85685.1
# Matrix: EBLOSUM62
# Gap_penalty: 14
# Extend_penalty: 4
#
# Length: 16
# Identity: 7/16 (43.8%)
# Similarity: 8/16 (50.0%)
# Gaps: 0/16 ( 0.0%)
# Score: 29
#
#
#=======================================
AF069992_1 73 GPPPQSPDENRAGESS 88
|.||:......|.|||
CAA85685.1 47 GVPPEEAGAAVAAESS 62
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#---------------------------------------