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Adding two DTD files for the NCBI E-Utilities
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mdehoon committed Sep 17, 2010
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197 changes: 197 additions & 0 deletions Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd
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<!-- NLM MedlineCitationSet DTD

This is the DTD which NLM has written for Internal and External Use.
January 1, 2011

**THIS IS THE FORTHCOMING DTD FOR 2011 NOT CURRENTLY IN USE.
SEE http://www.nlm.nih.gov/databases/dtd/nlmmedlinecitationset_100101.dtd
FOR THE NLMMedlineCitationSet DTD DATED JANUARY 1, 2010 CURRENTLY IN USE.**


NOTE: The use of "Medline" in a DTD or element name does not mean the record
represents a citation from a Medline-selected journal. When the NLM DTDs and
XML elements were first created, MEDLINE records were the only data exported.
Now NLM exports citations other than MEDLINE records using these tools. To
minimize unnecessary disruption to users of the data and tools, NLM has
retained the original DTD and element names (e.g., NLMMedlineCitationSet,
MedlineTA, MedlineJournalInfo)).

NOTE: StartPage and EndPage in Pagination element and NameID in Author
and Investigator elements are not currently used; are reserved for future use.


* = 0 or more occurrences (optional element, repeatable)
? = 0 or 1 occurrences (optional element, at most 1)
+ = 1 or more occurrences (required element, repeatable)
| = choice, one or the other but not both
no symbol = required element
-->
<!-- ================================================================= -->
<!-- Revision Notes Section

The following changes were made:

a. Changed nlmmedlinecitationset_100101.dtd to
nlmmedlinecitationset_110101.dtd.
b. Added Label and NlmCategory attributes to AbstractText.
c. Added element SupplMeshList to MedlineCitation.
d. Added element SupplMeshName with Type attribute to SupplMeshList.
e. Added Type attribute to DescriptorName.
f. Added VersionID and VersionDate attributes to MedlineCitation.
g. Added Version attribute to PMID.
h. Repositioned NameID element in Author.
i. Changed NameID Source attribute to unspecified values.
j. Added new Owner attribute valid value NLM-AUTO.

See http://www.nlm.nih.gov/databases/dtd/history_dtd_nlmmedline.html for historic Revision Notes for previous versions of NLMMedlineCitationSet DTD.
-->
<!-- ====================================================================== -->
<!ENTITY % format " b | i | sup | sub | u " >
<!ENTITY % text "(#PCDATA | %format;)*" >
<!ELEMENT b %text; > <!-- bold -->
<!ELEMENT i %text; > <!-- italic -->
<!ELEMENT sup %text; > <!-- superscript -->
<!ELEMENT sub %text; > <!-- subscript -->
<!ELEMENT u %text; > <!-- underline -->
<!-- ================================================================= -->
<!ELEMENT MedlineCitationSet (MedlineCitation*, DeleteCitation?)>
<!ELEMENT MedlineCitation (PMID, DateCreated, DateCompleted?, DateRevised?,
Article, MedlineJournalInfo, ChemicalList?,SupplMeshList?,
CitationSubset*, CommentsCorrectionsList?, GeneSymbolList?,
MeshHeadingList?,NumberOfReferences?, PersonalNameSubjectList?,
OtherID*, OtherAbstract*, KeywordList*, SpaceFlightMission*,
InvestigatorList?, GeneralNote*)>
<!ATTLIST MedlineCitation
Owner (NLM | NASA | PIP | KIE | HSR | HMD | NOTNLM) "NLM"
Status (Completed | In-Process | PubMed-not-MEDLINE |
In-Data-Review | Publisher | MEDLINE |
OLDMEDLINE) #REQUIRED
VersionID CDATA #IMPLIED
VersionDate CDATA #IMPLIED>
<!ELEMENT Abstract (AbstractText+,CopyrightInformation?)>
<!ELEMENT AbstractText %text;>
<!ATTLIST AbstractText
Label CDATA #IMPLIED
NlmCategory (UNLABELLED | BACKGROUND | OBJECTIVE | METHODS |
RESULTS | CONCLUSIONS) #IMPLIED>
<!ELEMENT AccessionNumber (#PCDATA)>
<!ELEMENT AccessionNumberList (AccessionNumber+)>
<!ELEMENT Acronym (#PCDATA)>
<!ELEMENT Affiliation %text;>
<!ELEMENT Agency (#PCDATA)>
<!ELEMENT Article (Journal,ArticleTitle,((Pagination, ELocationID*) |
ELocationID+),Abstract?, Affiliation?, AuthorList?,
Language+, DataBankList?, GrantList?,PublicationTypeList,
VernacularTitle?, ArticleDate*)>
<!ATTLIST Article
PubModel (Print | Print-Electronic | Electronic |
Electronic-Print) #REQUIRED>
<!ELEMENT ArticleDate (Year,Month,Day)>
<!ATTLIST ArticleDate DateType CDATA #FIXED "Electronic">
<!ELEMENT ArticleTitle %text;>
<!ELEMENT Author (((LastName, ForeName?, Initials?, Suffix?) |
CollectiveName),NameID*)>
<!ATTLIST Author ValidYN (Y | N) "Y">
<!ELEMENT AuthorList (Author+)>
<!ATTLIST AuthorList CompleteYN (Y | N) "Y">
<!ELEMENT Chemical (RegistryNumber,NameOfSubstance)>
<!ELEMENT ChemicalList (Chemical+)>
<!ELEMENT CitationSubset (#PCDATA)>
<!ELEMENT CollectiveName %text;>
<!ELEMENT CommentsCorrections (RefSource,PMID?,Note?)>
<!ATTLIST CommentsCorrections
RefType (CommentOn | CommentIn | ErratumIn | ErratumFor |
PartialRetractionIn | PartialRetractionOf | RepublishedFrom |
RepublishedIn | RetractionOf | RetractionIn | UpdateIn |
UpdateOf | SummaryForPatientsIn | OriginalReportIn |
ReprintOf | ReprintIn | Cites) #REQUIRED >
<!ELEMENT CommentsCorrectionsList (CommentsCorrections+)>
<!ELEMENT CopyrightInformation (#PCDATA)>
<!ELEMENT Country (#PCDATA)>
<!ELEMENT DataBank (DataBankName, AccessionNumberList?)>
<!ELEMENT DataBankList (DataBank+)>
<!ATTLIST DataBankList CompleteYN (Y | N) "Y">
<!ELEMENT DataBankName (#PCDATA)>
<!ELEMENT DateCompleted (Year,Month,Day)>
<!ELEMENT DateCreated (Year,Month,Day)>
<!ELEMENT DateRevised (Year,Month,Day)>
<!ELEMENT Day (#PCDATA)>
<!ELEMENT DescriptorName (#PCDATA)>
<!ATTLIST DescriptorName
MajorTopicYN (Y | N) "N"
Type (Geographic) #IMPLIED>
<!ELEMENT ELocationID (#PCDATA)>
<!ATTLIST ELocationID EIdType (doi | pii) #REQUIRED
ValidYN (Y | N) "Y">
<!ELEMENT EndPage (#PCDATA)>
<!ELEMENT ForeName (#PCDATA)>
<!ELEMENT GeneSymbol (#PCDATA)>
<!ELEMENT GeneSymbolList (GeneSymbol+)>
<!ELEMENT GeneralNote (#PCDATA)>
<!ATTLIST GeneralNote Owner (NLM | NASA | PIP | KIE | HSR | HMD) "NLM">
<!ELEMENT Grant (GrantID?, Acronym?, Agency, Country)>
<!ELEMENT GrantID (#PCDATA)>
<!ELEMENT GrantList (Grant+)>
<!ATTLIST GrantList CompleteYN (Y | N) "Y">
<!ELEMENT ISOAbbreviation (#PCDATA)>
<!ELEMENT ISSN (#PCDATA)>
<!ATTLIST ISSN IssnType (Electronic | Print) #REQUIRED>
<!ELEMENT ISSNLinking (#PCDATA)>
<!ELEMENT Initials (#PCDATA)>
<!ELEMENT Investigator (LastName,ForeName?, Initials?,Suffix?,NameID*,Affiliation?)>
<!ATTLIST Investigator ValidYN (Y | N) "Y">
<!ELEMENT InvestigatorList (Investigator+)>
<!ELEMENT Issue (#PCDATA)>
<!ELEMENT Journal (ISSN?, JournalIssue, Title?, ISOAbbreviation?)>
<!ELEMENT JournalIssue (Volume?, Issue?, PubDate)>
<!ATTLIST JournalIssue CitedMedium (Internet | Print) #REQUIRED>
<!ELEMENT Keyword %text;>
<!ATTLIST Keyword MajorTopicYN (Y | N) "N">
<!ELEMENT KeywordList (Keyword+)>
<!ATTLIST KeywordList Owner (NLM | NLM-AUTO | NASA | PIP | KIE | NOTNLM) "NLM">
<!ELEMENT Language (#PCDATA)>
<!ELEMENT LastName (#PCDATA)>
<!ELEMENT MedlineDate (#PCDATA)>
<!ELEMENT MedlineJournalInfo (Country?, MedlineTA, NlmUniqueID?,ISSNLinking?)>
<!ELEMENT MedlinePgn (#PCDATA)>
<!ELEMENT MedlineTA (#PCDATA)>
<!ELEMENT MeshHeading (DescriptorName, QualifierName*)>
<!ELEMENT MeshHeadingList (MeshHeading+)>
<!ELEMENT Month (#PCDATA)>
<!ELEMENT NameID (#PCDATA)>
<!ATTLIST NameID
Source CDATA #REQUIRED >
<!ELEMENT NameOfSubstance (#PCDATA)>
<!ELEMENT NlmUniqueID (#PCDATA)>
<!ELEMENT Note (#PCDATA)>
<!ELEMENT NumberOfReferences (#PCDATA)>
<!ELEMENT OtherAbstract (AbstractText+,CopyrightInformation?)>
<!ATTLIST OtherAbstract Type (AAMC | AIDS | KIE | PIP |
NASA | Publisher) #REQUIRED>
<!ELEMENT OtherID (#PCDATA)>
<!ATTLIST OtherID Source (NASA | KIE | PIP | POP | ARPL | CPC |
IND | CPFH | CLML | NRCBL | NLM) #REQUIRED>
<!ELEMENT PMID (#PCDATA)>
<!ATTLIST PMID Version CDATA #REQUIRED>
<!ELEMENT Pagination ((StartPage, EndPage?, MedlinePgn?) | MedlinePgn)>
<!ELEMENT PersonalNameSubject (LastName,ForeName?, Initials?,Suffix?)>
<!ELEMENT PersonalNameSubjectList (PersonalNameSubject+)>
<!ELEMENT PubDate ((Year, ((Month, Day?) | Season)?) | MedlineDate)>
<!ELEMENT PublicationType (#PCDATA)>
<!ELEMENT PublicationTypeList (PublicationType+)>
<!ELEMENT QualifierName (#PCDATA)>
<!ATTLIST QualifierName MajorTopicYN (Y | N) "N">
<!ELEMENT RefSource (#PCDATA)>
<!ELEMENT RegistryNumber (#PCDATA)>
<!ELEMENT Season (#PCDATA)>
<!ELEMENT SpaceFlightMission (#PCDATA)>
<!ELEMENT StartPage (#PCDATA)>
<!ELEMENT Suffix %text;>
<!ELEMENT SupplMeshList (SupplMeshName+)>
<!ELEMENT SupplMeshName (#PCDATA)>
<!ATTLIST SupplMeshName Type (Disease | Protocol) #REQUIRED>
<!ELEMENT Title (#PCDATA)>
<!ELEMENT VernacularTitle %text;>
<!ELEMENT Volume (#PCDATA)>
<!ELEMENT Year (#PCDATA)>
<!ELEMENT DeleteCitation (PMID+)>
79 changes: 79 additions & 0 deletions Bio/Entrez/DTDs/pubmed_110101.dtd
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<!--
This is the Current DTD which NLM has written for
External Use. If you are a NCBI User, use the information
from the PubmedArticleSet.

Comments and suggestions are welcome.
(May 9, 2000)

Corrections:
~~~~~~~~~~~
Oct. 09 2002
- "PubMedArticle" has been renamed to "PubmedArticle"
- All referencies to "PubMedArticle" has been removed
- "ProviderId" has been removed from PubmedData
- "URL" has been removed from PubmdeData

$Id: pubmed_110101.dtd 204806 2010-09-10 17:50:53Z korobtch $

-->
<!-- ================================================================= -->
<!-- ================================================================= -->
<!-- Reference to Where the MEDLINECITATION DTD is located -->
<!ENTITY % Medline PUBLIC "-//NLM//DTD Medline, 01 Jan 2011//EN"
"nlmmedlinecitationset_110101.dtd">
%Medline;
<!-- ================================================================= -->
<!ENTITY % ArticleTitle.Ref "ArticleTitle">
<!ENTITY % ISSN.Ref "ISSN?">
<!ENTITY % Pub.Date.Ref "PubDate?">
<!ENTITY % iso.language.codes "(AF|AR|AZ|BG|CS|DA|DE|EN|EL|ES|FA|FI|FR|HE|
HU|HY|IN|IS|IT|IW|JA|KA|KO|LT|MK|ML|NL|NO|
PL|PT|PS|RO|RU|SL|SK|SQ|SR|SV|SW|TH|TR|UK|
VI|ZH)">
<!ENTITY % pub.status.int "pmc | pmcr | pubmed | pubmedr |
premedline | medline | medliner | entrez | pmc-release">
<!ENTITY % pub.status "(received | accepted | epublish |
ppublish | revised | aheadofprint |
retracted | %pub.status.int;)">
<!ENTITY % art.id.type.int "pubmed | medline | pmcid | pmcbook | bookaccession">

<!ENTITY % art.id.type "(doi | pii | pmcpid | pmpid | pmc | mid |
sici | %art.id.type.int;)">
<!-- ================================================================= -->
<!ELEMENT PubmedArticleSet (PubmedArticle | PubmedBookArticle)+>
<!-- ================================================================= -->
<!-- This is the top level element for PubMedArticle -->
<!ELEMENT PubmedArticle (MedlineCitation, PubmedData?)>
<!-- ================================================================= -->
<!ENTITY % normal.date "Year, Month, Day, (Hour, (Minute, Second?)?)?">
<!ELEMENT PubmedData (History?, PublicationStatus, ArticleIdList, ObjectList?)>
<!ELEMENT PubMedPubDate (%normal.date;)>
<!ATTLIST PubMedPubDate
PubStatus %pub.status; #REQUIRED
>
<!ELEMENT PublicationStatus (#PCDATA)>
<!ELEMENT ArticleIdList (ArticleId+)>
<!ELEMENT ArticleId (#PCDATA)>
<!ATTLIST ArticleId
IdType %art.id.type; "pubmed"
>
<!ELEMENT History (PubMedPubDate+)>
<!ELEMENT URL (#PCDATA)>
<!ATTLIST URL
lang %iso.language.codes; #IMPLIED
Type ( FullText | Summary | fulltext | summary) #IMPLIED
>
<!ELEMENT ObjectList (Object)+>
<!ELEMENT Object (Param)*>
<!ATTLIST Object Type CDATA #REQUIRED>
<!ELEMENT Param (#PCDATA)>
<!ATTLIST Param Name CDATA #REQUIRED>
<!ELEMENT Hour (#PCDATA)>
<!ELEMENT Minute (#PCDATA)>
<!ELEMENT Second (#PCDATA)>

<!-- ================================================================= -->
<!ENTITY % Bookdoc PUBLIC "-//NLM//DTD Bookdoc, 01 Jan 2011//EN" "bookdoc_110101.dtd">
%Bookdoc;
<!-- ================================================================= -->

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