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Tests/test_prosite2.py

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+# Copyright 1999 by Jeffrey Chang.  All rights reserved.
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
+
+import os
+from types import *
+from Bio import File
+from Bio import ParserSupport
+from Bio.Prosite import Prosite
+
+
+tests = [ 'ps00107.txt', 'ps00159.txt', 'ps00165.txt', 'ps00213.txt', 'ps00432.txt', \
+    'ps00488.txt', 'ps00546.txt' ]
+record_parser = Prosite.RecordParser()
+
+def print_list( list ):
+    for item in list:
+        print( '    ' + str( item ) )
+
+for test in tests:
+    print "testing %s" % test
+    datafile = os.path.join( 'Prosite', test )
+    src_handle = open( datafile )
+    data = record_parser.parse( src_handle )
+    print data.name
+    print data.type
+    print data.accession
+    print data.created
+    print data.data_update
+#    print data.data_info
+    print data.pdoc
+    print data.description
+    print data.pattern
+    print data.matrix
+    print data.rules
+    print data.nr_sp_release
+    print data.nr_sp_seqs
+    print data.cc_taxo_range
+    print data.cc_max_repeat
+#    print data.name
+    print 'cc_site'
+    print_list( data.cc_site )
+    print 'dr_positive'
+    print_list( data.dr_positive )
+    print 'dr_false_neg'
+    print_list( data.dr_false_neg )
+    print 'dr_false_pos'
+    print_list( data.dr_false_pos )
+    print 'dr_potential'
+    print_list( data.dr_potential )
+    print 'dr_unknown'
+    print_list( data.dr_unknown )
+    print 'pdb_structs'
+    print_list( data.pdb_structs )
+