Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Validate failed #5

Closed
eyalbenda opened this issue May 22, 2018 · 1 comment
Closed

Validate failed #5

eyalbenda opened this issue May 22, 2018 · 1 comment

Comments

@eyalbenda
Copy link

eyalbenda commented May 22, 2018

My JSON configuration isn't being parsed, and the output doesn't provide information for figuring out what's wrong. I've tried to model it as best I could on the website example to get it to work. the python JSON validation shows no errors.
My setting is the following: I have two fastq files from illumina paired end sequencing. Read 1 contains the sequenced DNA, and read 2 contains three ranges of multiplex barcodes, and one range of molecular barcode.
Any help with figuring out what I'm doing wrong would be great!

The config file (changed extension to txt to upload):
pheniqsConf.txt

@eyalbenda eyalbenda changed the title Non informative validate output Validate failed May 22, 2018
@moonwatcher
Copy link
Contributor

Hi eyal, sorry I didn’t get back to you earlier, I didn’t notice the ticket :(

You seem to encode every value as an element in an array... take a look at the manual for the example and compare, I think it will pop right out.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants