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Phylo beta diversity #18

Merged
merged 62 commits into from
Apr 19, 2019
Merged

Phylo beta diversity #18

merged 62 commits into from
Apr 19, 2019

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cjgrady
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@cjgrady cjgrady commented Mar 13, 2019

Pull Request Type

  • Bug Fix
  • New Feature
  • Other

Status

  • Ready
  • In development
  • Hold

Description

The goal of this pull request is to add metrics for phylogenetic beta diversity

Link(s) to issue

#16

Todos

  • Tests
  • Documentation
  • Sample Data

Added dependencies

NA

Testing

I will write tests based on the sample outputs generated from https://rdrr.io/rforge/betapart/man/phylo.beta.pair.html

Sample Data

Sample inputs and ouputs will be generated based on the example at: https://rdrr.io/rforge/betapart/man/phylo.beta.pair.html

Boilerplate code for phylogenetic beta diversity stats
Updates code style for PEP8 compliance and corrects meta values for package.
Mostly link to our GitHub pages site
Updates README with some basic information
Release badge will update once we release version 1.0
Adds test for script executable
cjgrady and others added 29 commits March 13, 2019 19:42
Add documentation build instructions
Replaces data_files fixture in favor of pytest parameterization
Adds test parametrization fixtures
@cjgrady cjgrady merged commit 5ece724 into release-1.1.0 Apr 19, 2019
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2 participants