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What is this repository for?

  • R client for accessing MyGene.info annotation and query services
  • Package vignette

To install mygene:

  • Install from Bioconductor by typing in your R console:
source("http://bioconductor.org/biocLite.R")
biocLite("mygene")

Contact

How to push changes to bioconductor

Ref: https://bioconductor.org/developers/how-to/git/push-to-github-bioc/

  • Make sure you have the commit permission to git.bioconductor.org

    Setup at https://git.bioconductor.org/BiocCredentials/login/

  • Make sure proper git remote upstream is added following the instruction above

    $ git remote -v
origin  git@github.com:biothings/mygene.R.git (fetch)
origin  git@github.com:biothings/mygene.R.git (push)
upstream        git@git.bioconductor.org:packages/mygene.git (fetch)
upstream        git@git.bioconductor.org:packages/mygene.git (push)

  • Make changes and commit to origin/master

  • Merge and push changes to git.bioconductor.org

    git fetch upstream
git merge upstream/master

    Fix any merge conflicts and push the changes to upstream

    git push merge upstream master

Also follow this instruction for bugfix in a release branch: http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/.

and this for bumping version after a bugfix: http://bioconductor.org/developers/how-to/version-numbering/.