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jupyter env: new build for new XClim and to get Dask dashboard and Panel server app to work #241

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merged 16 commits into from May 5, 2022

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tlvu
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@tlvu tlvu commented Apr 13, 2022

Deploy new Jupyter env from PR Ouranosinc/PAVICS-e2e-workflow-tests#105 on PAVICS.

Detailed changes can be found at Ouranosinc/PAVICS-e2e-workflow-tests#105.

Dask dashboard no manual URL mangling required:

Screenshot from 2022-04-13 22-37-49

"Render with Panel" button works:
Screenshot from 2022-05-04 15-18-03

Relevant changes:

# new
>   - dask-labextension=5.2.0=pyhd8ed1ab_0
>   - jupyter-panel-proxy=0.2.0a2=py_0
>   - jupyter-server-proxy=3.2.1=pyhd8ed1ab_0

# removed, interfere with panel
<     - handcalcs==1.4.1

<   - xclim=0.34.0=pyhd8ed1ab_0
>   - xclim=0.36.0=pyhd8ed1ab_0

<   - cf_xarray=0.6.3=pyhd8ed1ab_0
>   - cf_xarray=0.7.2=pyhd8ed1ab_0

<   - clisops=0.8.0=pyh6c4a22f_0
>   - clisops=0.9.0=pyh6c4a22f_0

# downgrade by clisops
<   - pandas=1.4.1=py38h43a58ef_0
>   - pandas=1.3.5=py38h43a58ef_0

<   - rioxarray=0.10.3=pyhd8ed1ab_0
>   - rioxarray=0.11.1=pyhd8ed1ab_0

<   - nc-time-axis=1.4.0=pyhd8ed1ab_0
>   - nc-time-axis=1.4.1=pyhd8ed1ab_0

<   - roocs-utils=0.5.0=pyh6c4a22f_0
>   - roocs-utils=0.6.1=pyh6c4a22f_0

<   - panel=0.12.7=pyhd8ed1ab_0
>   - panel=0.13.1a2=py_0

<   - plotly=5.6.0=pyhd8ed1ab_0
>   - plotly=5.7.0=pyhd8ed1ab_0

… app

With this setting, we will not need to provide `websocket_origin` as in the
sample code below.

```
import panel as pn
srv = pn.panel(
    pn.widgets.FloatInput(name='an input')
).show(port=5007, websocket_origin="pavics.ouranos.ca")
```
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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/859/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : new-jupyter-env
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-227.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/741/

NOTEBOOK TEST RESULTS
    
[2022-04-13T22:22:21.863Z] ============================= test session starts ==============================
[2022-04-13T22:22:21.863Z] platform linux -- Python 3.8.13, pytest-7.1.1, pluggy-1.0.0
[2022-04-13T22:22:21.863Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-04-13T22:22:21.863Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-04-13T22:22:21.863Z] collected 244 items
[2022-04-13T22:22:21.864Z] 
[2022-04-13T22:22:31.541Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-04-13T22:23:41.656Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-04-13T22:23:53.119Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-04-13T22:24:03.739Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-04-13T22:24:06.177Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-04-13T22:26:46.481Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-04-13T22:27:06.375Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-04-13T22:27:24.627Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-04-13T22:27:49.169Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-04-13T22:27:50.541Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-04-13T22:27:56.922Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-04-13T22:28:04.978Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-04-13T22:32:04.242Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-04-13T22:33:01.620Z] ..............                                                           [ 43%]
[2022-04-13T22:33:08.945Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 45%]
[2022-04-13T22:33:11.152Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 48%]
[2022-04-13T22:34:21.466Z] .................                                                        [ 55%]
[2022-04-13T22:34:29.567Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 57%]
[2022-04-13T22:34:31.483Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-04-13T22:34:42.135Z] ..F....FF.                                                               [ 61%]
[2022-04-13T22:34:55.620Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-04-13T22:35:05.031Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 68%]
[2022-04-13T22:35:56.548Z] finch-master/docs/source/notebooks/subset.ipynb .....................    [ 77%]
[2022-04-13T22:35:57.947Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-04-13T22:36:03.356Z] ......                                                                   [ 79%]
[2022-04-13T22:36:59.590Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-04-13T22:37:24.563Z] .............                                                            [ 85%]
[2022-04-13T22:37:36.775Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-04-13T22:40:36.409Z] ....s.                                                                   [ 88%]
[2022-04-13T22:40:51.336Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2022-04-13T22:40:56.292Z] ...                                                                      [ 90%]
[2022-04-13T22:41:18.259Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-04-13T22:41:51.695Z] ......                                                                   [ 93%]
[2022-04-13T22:41:57.965Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-04-13T22:45:23.643Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-04-13T22:45:23.643Z] 
[2022-04-13T22:45:23.643Z] =================================== FAILURES ===================================
    
  

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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/860/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : new-jupyter-env
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-227.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/742/

NOTEBOOK TEST RESULTS
    
[2022-04-13T23:22:42.820Z] ============================= test session starts ==============================
[2022-04-13T23:22:42.820Z] platform linux -- Python 3.8.13, pytest-7.1.1, pluggy-1.0.0
[2022-04-13T23:22:42.820Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-04-13T23:22:42.820Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-04-13T23:22:42.820Z] collected 244 items
[2022-04-13T23:22:42.820Z] 
[2022-04-13T23:22:51.574Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-04-13T23:23:13.083Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-04-13T23:23:22.612Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-04-13T23:23:30.557Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-04-13T23:23:33.961Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-04-13T23:25:59.685Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-04-13T23:26:17.704Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-04-13T23:26:32.595Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-04-13T23:26:56.477Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-04-13T23:26:57.311Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-04-13T23:27:03.403Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-04-13T23:27:10.649Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-04-13T23:30:37.243Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-04-13T23:31:36.699Z] ..............                                                           [ 43%]
[2022-04-13T23:31:45.533Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 45%]
[2022-04-13T23:31:47.753Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 48%]
[2022-04-13T23:32:47.459Z] .................                                                        [ 55%]
[2022-04-13T23:32:55.520Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 57%]
[2022-04-13T23:32:56.905Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-04-13T23:33:13.278Z] ..F....FF.                                                               [ 61%]
[2022-04-13T23:33:24.796Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-04-13T23:33:34.230Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 68%]
[2022-04-13T23:34:26.847Z] finch-master/docs/source/notebooks/subset.ipynb .....................    [ 77%]
[2022-04-13T23:34:28.226Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-04-13T23:34:32.704Z] ......                                                                   [ 79%]
[2022-04-13T23:35:28.961Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-04-13T23:35:52.838Z] .............                                                            [ 85%]
[2022-04-13T23:36:02.870Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-04-13T23:37:20.463Z] ....s.                                                                   [ 88%]
[2022-04-13T23:37:32.695Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2022-04-13T23:37:39.111Z] ...                                                                      [ 90%]
[2022-04-13T23:37:57.280Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-04-13T23:38:32.435Z] ......                                                                   [ 93%]
[2022-04-13T23:38:41.422Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-04-13T23:42:01.425Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-04-13T23:42:01.425Z] 
[2022-04-13T23:42:01.425Z] =================================== FAILURES ===================================
    
  

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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/861/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : new-jupyter-env
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-227.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/743/

NOTEBOOK TEST RESULTS
    
[2022-04-14T00:43:14.091Z] ============================= test session starts ==============================
[2022-04-14T00:43:14.091Z] platform linux -- Python 3.8.13, pytest-7.1.1, pluggy-1.0.0
[2022-04-14T00:43:14.091Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-04-14T00:43:14.091Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-04-14T00:43:14.091Z] collected 244 items
[2022-04-14T00:43:14.091Z] 
[2022-04-14T00:43:21.503Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-04-14T00:43:41.690Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-04-14T00:43:52.113Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-04-14T00:43:59.474Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-04-14T00:44:02.349Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-04-14T00:46:47.144Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-04-14T00:47:03.261Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-04-14T00:47:18.156Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-04-14T00:47:43.629Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-04-14T00:47:45.018Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-04-14T00:47:51.253Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-04-14T00:47:59.280Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-04-14T00:51:11.176Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-04-14T00:52:19.330Z] ..............                                                           [ 43%]
[2022-04-14T00:52:26.871Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 45%]
[2022-04-14T00:52:29.047Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 48%]
[2022-04-14T00:53:31.433Z] .................                                                        [ 55%]
[2022-04-14T00:53:38.818Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 57%]
[2022-04-14T00:53:40.737Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-04-14T00:53:56.437Z] ..F....FF.                                                               [ 61%]
[2022-04-14T00:54:08.079Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-04-14T00:54:17.478Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 68%]
[2022-04-14T00:55:08.802Z] finch-master/docs/source/notebooks/subset.ipynb .....................    [ 77%]
[2022-04-14T00:55:10.713Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-04-14T00:55:14.648Z] ......                                                                   [ 79%]
[2022-04-14T00:56:01.343Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-04-14T00:56:25.371Z] .............                                                            [ 85%]
[2022-04-14T00:56:35.400Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-04-14T00:57:43.491Z] ....s.                                                                   [ 88%]
[2022-04-14T00:57:53.462Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2022-04-14T00:57:59.638Z] ...                                                                      [ 90%]
[2022-04-14T00:58:14.567Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-04-14T00:58:53.528Z] ......                                                                   [ 93%]
[2022-04-14T00:59:03.500Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-04-14T01:02:22.938Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-04-14T01:02:22.939Z] 
[2022-04-14T01:02:22.939Z] =================================== FAILURES ===================================
    
  

Following https://docs.bokeh.org/en/latest/docs/user_guide/jupyter.html#jupyterhub

======

Define a function to help create the URL for the browser to connect to the Bokeh server.

See below for a reference implementation. You’ll have to either modify this code or assign the URL of your JupyterHub installation to the environment variable EXTERNAL_URL. JupyterHub defaults to JUPYTERHUB_SERVICE_PREFIX in this case.

def remote_jupyter_proxy_url(port):
    """
    Callable to configure Bokeh's show method when a proxy must be
    configured.

    If port is None we're asking about the URL
    for the origin header.
    """
    base_url = os.environ['EXTERNAL_URL']
    host = urllib.parse.urlparse(base_url).netloc

    # If port is None we're asking for the URL origin
    # so return the public hostname.
    if port is None:
        return host

    service_url_path = os.environ['JUPYTERHUB_SERVICE_PREFIX']
    proxy_url_path = 'proxy/%d' % port

    user_url = urllib.parse.urljoin(base_url, service_url_path)
    full_url = urllib.parse.urljoin(user_url, proxy_url_path)
    return full_url

Pass the function you defined in step 2 to the show() function as the notebook_url keyword argument. Bokeh then calls this function when it sets up the server and creates the URL to load a graph:

show(obj, notebook_url=remote_jupyter_proxy_url)

=========
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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/862/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : new-jupyter-env
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-227.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/744/

NOTEBOOK TEST RESULTS
    
[2022-04-14T01:43:11.784Z] ============================= test session starts ==============================
[2022-04-14T01:43:11.784Z] platform linux -- Python 3.8.13, pytest-7.1.1, pluggy-1.0.0
[2022-04-14T01:43:11.784Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-04-14T01:43:11.784Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-04-14T01:43:11.784Z] collected 244 items
[2022-04-14T01:43:11.784Z] 
[2022-04-14T01:43:20.620Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-04-14T01:43:37.877Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-04-14T01:43:47.315Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-04-14T01:43:57.888Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-04-14T01:44:00.180Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-04-14T01:46:12.526Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-04-14T01:46:29.571Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-04-14T01:46:44.544Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-04-14T01:47:08.100Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-04-14T01:47:09.999Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-04-14T01:47:15.476Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-04-14T01:47:21.966Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-04-14T01:51:34.460Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-04-14T01:52:40.995Z] ..............                                                           [ 43%]
[2022-04-14T01:52:50.470Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 45%]
[2022-04-14T01:52:52.943Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 48%]
[2022-04-14T01:53:53.694Z] .................                                                        [ 55%]
[2022-04-14T01:54:01.449Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 57%]
[2022-04-14T01:54:02.836Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-04-14T01:54:13.183Z] ..F....FF.                                                               [ 61%]
[2022-04-14T01:54:25.282Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-04-14T01:54:34.300Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 68%]
[2022-04-14T01:55:25.797Z] finch-master/docs/source/notebooks/subset.ipynb .....................    [ 77%]
[2022-04-14T01:55:27.187Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-04-14T01:55:32.147Z] ......                                                                   [ 79%]
[2022-04-14T01:56:04.242Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-04-14T01:56:30.741Z] .............                                                            [ 85%]
[2022-04-14T01:56:42.974Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-04-14T01:57:54.331Z] ....s.                                                                   [ 88%]
[2022-04-14T01:58:06.570Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2022-04-14T01:58:12.030Z] ...                                                                      [ 90%]
[2022-04-14T01:58:30.272Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-04-14T01:59:09.842Z] ......                                                                   [ 93%]
[2022-04-14T01:59:24.724Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-04-14T02:02:43.194Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-04-14T02:02:43.194Z] 
[2022-04-14T02:02:43.194Z] =================================== FAILURES ===================================
    
  

@tlvu tlvu requested a review from huard April 14, 2022 02:53
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tlvu commented Apr 14, 2022

@tlogan2000 @huard I am able to customize the Dask dashboard display link but not the Bokeh Panel server one (opened them an issue bokeh/bokeh#12090).

It's deployed to medus for your testing. This one unable to directly deploy to the beta image in prod since we are altering the JupyterHub config.

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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/863/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : new-jupyter-env
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-227.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/745/

NOTEBOOK TEST RESULTS
    
[2022-04-14T02:39:05.419Z] ============================= test session starts ==============================
[2022-04-14T02:39:05.419Z] platform linux -- Python 3.8.13, pytest-7.1.1, pluggy-1.0.0
[2022-04-14T02:39:05.419Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-04-14T02:39:05.419Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-04-14T02:39:05.419Z] collected 244 items
[2022-04-14T02:39:05.419Z] 
[2022-04-14T02:39:13.509Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-04-14T02:39:37.180Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-04-14T02:39:48.469Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-04-14T02:39:55.645Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-04-14T02:39:58.554Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-04-14T02:42:28.681Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-04-14T02:42:48.941Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-04-14T02:43:03.833Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-04-14T02:43:28.706Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-04-14T02:43:29.650Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-04-14T02:43:35.390Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-04-14T02:43:43.417Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-04-14T02:46:41.618Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-04-14T02:47:43.744Z] ..............                                                           [ 43%]
[2022-04-14T02:47:52.432Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 45%]
[2022-04-14T02:47:55.030Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 48%]
[2022-04-14T02:49:37.145Z] ......FFFF.FFFFFF                                                        [ 55%]
[2022-04-14T02:49:37.145Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 57%]
[2022-04-14T02:49:37.709Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-04-14T02:49:53.270Z] ..FF...FF.                                                               [ 61%]
[2022-04-14T02:50:05.506Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-04-14T02:50:15.621Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 68%]
[2022-04-14T02:51:07.254Z] finch-master/docs/source/notebooks/subset.ipynb .....................    [ 77%]
[2022-04-14T02:51:09.165Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-04-14T02:51:13.572Z] ......                                                                   [ 79%]
[2022-04-14T02:51:45.670Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-04-14T02:52:10.782Z] .............                                                            [ 85%]
[2022-04-14T02:52:20.773Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-04-14T02:53:32.837Z] ....s.                                                                   [ 88%]
[2022-04-14T02:53:42.825Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2022-04-14T02:53:48.995Z] ...                                                                      [ 90%]
[2022-04-14T02:54:07.103Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-04-14T02:54:44.086Z] ......                                                                   [ 93%]
[2022-04-14T02:54:54.192Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-04-14T02:58:13.340Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-04-14T02:58:13.340Z] 
[2022-04-14T02:58:13.340Z] =================================== FAILURES ===================================
    
  

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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/864/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : new-jupyter-env
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-227.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/746/

NOTEBOOK TEST RESULTS
    
[2022-04-14T14:13:10.638Z] ============================= test session starts ==============================
[2022-04-14T14:13:10.638Z] platform linux -- Python 3.8.13, pytest-7.1.1, pluggy-1.0.0
[2022-04-14T14:13:10.638Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-04-14T14:13:10.638Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-04-14T14:13:10.638Z] collected 244 items
[2022-04-14T14:13:10.638Z] 
[2022-04-14T14:13:19.905Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-04-14T14:13:54.722Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-04-14T14:14:05.251Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-04-14T14:14:13.989Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-04-14T14:14:17.464Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-04-14T14:26:04.328Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-04-14T14:26:20.813Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-04-14T14:26:36.378Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-04-14T14:27:04.352Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-04-14T14:27:05.745Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-04-14T14:27:11.912Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-04-14T14:27:19.459Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-04-14T14:32:05.548Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-04-14T14:33:15.718Z] ..............                                                           [ 43%]
[2022-04-14T14:33:26.308Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 45%]
[2022-04-14T14:33:28.085Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 48%]
[2022-04-14T14:35:02.926Z] ......FFFF.FFFFFF                                                        [ 55%]
[2022-04-14T14:35:09.714Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 57%]
[2022-04-14T14:35:11.091Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-04-14T14:35:27.259Z] ..FF...FF.                                                               [ 61%]
[2022-04-14T14:35:39.664Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-04-14T14:35:49.312Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 68%]
[2022-04-14T14:36:43.394Z] finch-master/docs/source/notebooks/subset.ipynb .....................    [ 77%]
[2022-04-14T14:36:43.395Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-04-14T14:36:48.157Z] ......                                                                   [ 79%]
[2022-04-14T14:37:14.728Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-04-14T14:37:37.645Z] .............                                                            [ 85%]
[2022-04-14T14:37:47.660Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-04-14T14:39:01.291Z] ....s.                                                                   [ 88%]
[2022-04-14T14:39:16.202Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2022-04-14T14:39:21.393Z] ...                                                                      [ 90%]
[2022-04-14T14:39:43.322Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-04-14T14:40:20.844Z] ......                                                                   [ 93%]
[2022-04-14T14:40:26.473Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-04-14T14:43:51.734Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-04-14T14:43:51.735Z] 
[2022-04-14T14:43:51.735Z] =================================== FAILURES ===================================
    
  

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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/869/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : new-jupyter-env
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-71.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/750/

NOTEBOOK TEST RESULTS
    
[2022-04-22T19:15:58.101Z] ============================= test session starts ==============================
[2022-04-22T19:15:58.102Z] platform linux -- Python 3.8.13, pytest-7.1.1, pluggy-1.0.0
[2022-04-22T19:15:58.102Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-04-22T19:15:58.102Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-04-22T19:15:58.102Z] collected 244 items
[2022-04-22T19:15:58.102Z] 
[2022-04-22T19:16:02.927Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-04-22T19:16:43.211Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-04-22T19:16:53.428Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-04-22T19:17:03.055Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-04-22T19:17:05.903Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-04-22T19:20:55.662Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-04-22T19:21:18.988Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-04-22T19:21:37.087Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-04-22T19:22:04.701Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-04-22T19:22:06.354Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-04-22T19:22:12.246Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-04-22T19:22:20.196Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-04-22T19:26:05.120Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-04-22T19:27:15.673Z] ..............                                                           [ 43%]
[2022-04-22T19:27:27.981Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 45%]
[2022-04-22T19:27:30.300Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 48%]
[2022-04-22T19:27:59.549Z] .................                                                        [ 55%]
[2022-04-22T19:28:09.186Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 57%]
[2022-04-22T19:28:11.100Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-04-22T19:28:22.407Z] ..F....FF.                                                               [ 61%]
[2022-04-22T19:28:36.851Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-04-22T19:28:46.892Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 68%]
[2022-04-22T19:29:42.325Z] finch-master/docs/source/notebooks/subset.ipynb .....................    [ 77%]
[2022-04-22T19:29:43.270Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-04-22T19:29:48.541Z] ......                                                                   [ 79%]
[2022-04-22T19:30:20.652Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-04-22T19:30:36.344Z] .............                                                            [ 85%]
[2022-04-22T19:30:44.482Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-04-22T19:32:06.163Z] ....s.                                                                   [ 88%]
[2022-04-22T19:32:39.765Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2022-04-22T19:32:39.766Z] ...                                                                      [ 90%]
[2022-04-22T19:33:19.494Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-04-22T19:33:53.051Z] ......                                                                   [ 93%]
[2022-04-22T19:33:56.721Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-04-22T19:37:23.914Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-04-22T19:37:23.914Z] 
[2022-04-22T19:37:23.914Z] =================================== FAILURES ===================================
    
  

…no need to set it in jupyterhub_config.py anymore
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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/870/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : new-jupyter-env
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-71.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/751/

NOTEBOOK TEST RESULTS
    
[2022-04-24T01:48:54.855Z] ============================= test session starts ==============================
[2022-04-24T01:48:54.855Z] platform linux -- Python 3.8.13, pytest-7.1.1, pluggy-1.0.0
[2022-04-24T01:48:54.855Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-04-24T01:48:54.855Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-04-24T01:48:54.855Z] collected 244 items
[2022-04-24T01:48:54.855Z] 
[2022-04-24T01:49:02.763Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-04-24T01:49:39.752Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-04-24T01:49:50.911Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-04-24T01:50:31.104Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb .FFFFFFF       [ 13%]
[2022-04-24T01:50:31.105Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-04-24T01:52:13.391Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-04-24T01:52:30.611Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-04-24T01:58:22.595Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-04-24T01:58:44.848Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-04-24T01:58:47.397Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-04-24T01:58:53.822Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-04-24T01:59:01.792Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-04-24T02:02:46.531Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-04-24T02:03:57.284Z] ..............                                                           [ 43%]
[2022-04-24T02:04:02.740Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 45%]
[2022-04-24T02:04:05.417Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 48%]
[2022-04-24T02:04:30.145Z] .................                                                        [ 55%]
[2022-04-24T02:04:38.340Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 57%]
[2022-04-24T02:04:40.251Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-04-24T02:04:50.966Z] ..F....FF.                                                               [ 61%]
[2022-04-24T02:05:04.575Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-04-24T02:05:13.893Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 68%]
[2022-04-24T02:06:08.241Z] finch-master/docs/source/notebooks/subset.ipynb .....................    [ 77%]
[2022-04-24T02:06:09.176Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-04-24T02:06:12.985Z] ......                                                                   [ 79%]
[2022-04-24T02:06:34.981Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-04-24T02:06:47.428Z] .............                                                            [ 85%]
[2022-04-24T02:06:57.554Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-04-24T02:07:39.556Z] ....s.                                                                   [ 88%]
[2022-04-24T02:07:54.444Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2022-04-24T02:08:00.944Z] ...                                                                      [ 90%]
[2022-04-24T02:08:19.064Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-04-24T02:08:52.046Z] ......                                                                   [ 93%]
[2022-04-24T02:08:55.948Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-04-24T02:12:15.423Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-04-24T02:12:15.424Z] 
[2022-04-24T02:12:15.424Z] =================================== FAILURES ===================================
    
  

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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/871/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : new-jupyter-env
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-86.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/752/

NOTEBOOK TEST RESULTS
    
[2022-04-27T01:47:06.509Z] ============================= test session starts ==============================
[2022-04-27T01:47:06.510Z] platform linux -- Python 3.8.13, pytest-7.1.1, pluggy-1.0.0
[2022-04-27T01:47:06.510Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-04-27T01:47:06.510Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-04-27T01:47:06.510Z] collected 244 items
[2022-04-27T01:47:06.510Z] 
[2022-04-27T01:47:15.828Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-04-27T01:47:53.271Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-04-27T01:48:04.119Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-04-27T01:48:08.560Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb .FFFFFFF       [ 13%]
[2022-04-27T01:48:11.414Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-04-27T01:49:54.243Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-04-27T01:50:09.823Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-04-27T01:52:16.325Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb F                 [ 23%]
[2022-04-27T01:52:27.325Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-04-27T01:52:28.265Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-04-27T01:52:35.122Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-04-27T01:52:42.863Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-04-27T01:56:58.611Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-04-27T01:58:11.045Z] ..............                                                           [ 43%]
[2022-04-27T01:58:18.384Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 45%]
[2022-04-27T01:58:20.874Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 48%]
[2022-04-27T01:58:44.793Z] .................                                                        [ 55%]
[2022-04-27T01:58:52.811Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 57%]
[2022-04-27T01:58:54.714Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-04-27T01:59:05.413Z] ..F....FF.                                                               [ 61%]
[2022-04-27T01:59:17.466Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-04-27T01:59:27.241Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 68%]
[2022-04-27T02:00:19.899Z] finch-master/docs/source/notebooks/subset.ipynb .....................    [ 77%]
[2022-04-27T02:00:21.297Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-04-27T02:00:25.366Z] ......                                                                   [ 79%]
[2022-04-27T02:00:47.335Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-04-27T02:01:01.622Z] .............                                                            [ 85%]
[2022-04-27T02:01:11.644Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-04-27T02:01:58.300Z] ....s.                                                                   [ 88%]
[2022-04-27T02:02:13.230Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2022-04-27T02:02:19.364Z] ...                                                                      [ 90%]
[2022-04-27T02:02:41.372Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-04-27T02:03:13.913Z] ......                                                                   [ 93%]
[2022-04-27T02:03:19.744Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-04-27T02:06:24.724Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-04-27T02:06:24.725Z] 
[2022-04-27T02:06:24.725Z] =================================== FAILURES ===================================
    
  

@crim-jenkins-bot
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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/872/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : new-jupyter-env
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-86.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/753/

NOTEBOOK TEST RESULTS
    
[2022-04-27T02:42:18.554Z] ============================= test session starts ==============================
[2022-04-27T02:42:18.554Z] platform linux -- Python 3.8.13, pytest-7.1.1, pluggy-1.0.0
[2022-04-27T02:42:18.554Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-04-27T02:42:18.554Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-04-27T02:42:18.554Z] collected 244 items
[2022-04-27T02:42:18.554Z] 
[2022-04-27T02:42:27.273Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-04-27T02:42:45.482Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-04-27T02:42:55.147Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-04-27T02:43:02.885Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-04-27T02:43:05.619Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-04-27T02:44:48.145Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-04-27T02:45:03.153Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-04-27T02:46:54.759Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb F                 [ 23%]
[2022-04-27T02:47:19.792Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-04-27T02:47:21.171Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-04-27T02:47:29.526Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-04-27T02:47:37.788Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-04-27T02:50:35.178Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-04-27T02:51:39.671Z] ..............                                                           [ 43%]
[2022-04-27T02:51:48.350Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 45%]
[2022-04-27T02:51:50.578Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 48%]
[2022-04-27T02:52:15.371Z] .................                                                        [ 55%]
[2022-04-27T02:52:22.625Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 57%]
[2022-04-27T02:52:24.004Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-04-27T02:52:34.550Z] ..F....FF.                                                               [ 61%]
[2022-04-27T02:52:47.258Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-04-27T02:52:56.955Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 68%]
[2022-04-27T02:53:50.572Z] finch-master/docs/source/notebooks/subset.ipynb .....................    [ 77%]
[2022-04-27T02:53:51.141Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-04-27T02:53:56.104Z] ......                                                                   [ 79%]
[2022-04-27T02:54:42.840Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-04-27T02:54:55.519Z] .............                                                            [ 85%]
[2022-04-27T02:55:05.512Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-04-27T02:55:49.350Z] ....s.                                                                   [ 88%]
[2022-04-27T02:55:59.337Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2022-04-27T02:56:05.806Z] ...                                                                      [ 90%]
[2022-04-27T02:56:20.728Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-04-27T02:56:53.951Z] ......                                                                   [ 93%]
[2022-04-27T02:57:00.791Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-04-27T03:00:25.681Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-04-27T03:00:25.682Z] 
[2022-04-27T03:00:25.682Z] =================================== FAILURES ===================================
    
  

@crim-jenkins-bot
Copy link
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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/873/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : new-jupyter-env
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-86.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/754/

NOTEBOOK TEST RESULTS
    
[2022-04-27T13:31:00.645Z] ============================= test session starts ==============================
[2022-04-27T13:31:00.645Z] platform linux -- Python 3.8.13, pytest-7.1.1, pluggy-1.0.0
[2022-04-27T13:31:00.645Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-04-27T13:31:00.645Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-04-27T13:31:00.645Z] collected 244 items
[2022-04-27T13:31:00.645Z] 
[2022-04-27T13:31:07.859Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-04-27T13:31:39.784Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-04-27T13:31:52.752Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-04-27T13:32:03.810Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-04-27T13:32:06.430Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-04-27T13:42:18.065Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-04-27T13:42:36.372Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-04-27T13:42:51.381Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-04-27T13:43:19.402Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-04-27T13:43:20.796Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-04-27T13:43:31.334Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-04-27T13:43:39.330Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-04-27T13:48:08.254Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-04-27T13:49:13.041Z] ..............                                                           [ 43%]
[2022-04-27T13:49:26.196Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 45%]
[2022-04-27T13:49:28.527Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 48%]
[2022-04-27T13:49:54.035Z] .................                                                        [ 55%]
[2022-04-27T13:50:01.984Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 57%]
[2022-04-27T13:50:03.909Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-04-27T13:50:16.515Z] ..F....FF.                                                               [ 61%]
[2022-04-27T13:50:34.577Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-04-27T13:50:44.634Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 68%]
[2022-04-27T13:51:40.390Z] finch-master/docs/source/notebooks/subset.ipynb .....................    [ 77%]
[2022-04-27T13:51:41.501Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-04-27T13:51:45.363Z] ......                                                                   [ 79%]
[2022-04-27T13:52:07.326Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-04-27T13:52:20.435Z] .............                                                            [ 85%]
[2022-04-27T13:52:30.478Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-04-27T13:53:22.963Z] ....s.                                                                   [ 88%]
[2022-04-27T13:53:37.976Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2022-04-27T13:53:43.181Z] ...                                                                      [ 90%]
[2022-04-27T13:54:09.736Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-04-27T13:54:43.437Z] ......                                                                   [ 93%]
[2022-04-27T13:54:48.249Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-04-27T13:58:10.808Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-04-27T13:58:10.808Z] 
[2022-04-27T13:58:10.808Z] =================================== FAILURES ===================================
    
  

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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/874/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : new-jupyter-env
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-86.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/755/

NOTEBOOK TEST RESULTS
    
[2022-04-28T18:03:58.442Z] ============================= test session starts ==============================
[2022-04-28T18:03:58.442Z] platform linux -- Python 3.8.13, pytest-7.1.1, pluggy-1.0.0
[2022-04-28T18:03:58.442Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-04-28T18:03:58.442Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-04-28T18:03:58.442Z] collected 244 items
[2022-04-28T18:03:58.442Z] 
[2022-04-28T18:04:08.335Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-04-28T18:04:44.680Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-04-28T18:04:56.246Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-04-28T18:05:36.371Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb .FFFFFFF       [ 13%]
[2022-04-28T18:05:37.466Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-04-28T18:07:05.868Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-04-28T18:07:31.293Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-04-28T18:07:49.380Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-04-28T18:08:12.765Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-04-28T18:08:13.712Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-04-28T18:08:22.514Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-04-28T18:08:30.480Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-04-28T18:12:16.987Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-04-28T18:13:20.226Z] ..............                                                           [ 43%]
[2022-04-28T18:13:29.333Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 45%]
[2022-04-28T18:13:31.644Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 48%]
[2022-04-28T18:13:55.410Z] .................                                                        [ 55%]
[2022-04-28T18:14:03.141Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 57%]
[2022-04-28T18:14:05.052Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-04-28T18:14:16.000Z] ..F....FF.                                                               [ 61%]
[2022-04-28T18:14:29.447Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-04-28T18:14:39.347Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 68%]
[2022-04-28T18:15:29.834Z] finch-master/docs/source/notebooks/subset.ipynb .....................    [ 77%]
[2022-04-28T18:15:31.218Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-04-28T18:15:34.783Z] ......                                                                   [ 79%]
[2022-04-28T18:15:56.748Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-04-28T18:16:07.854Z] .............                                                            [ 85%]
[2022-04-28T18:16:16.041Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-04-28T18:16:58.800Z] ....s.                                                                   [ 88%]
[2022-04-28T18:17:13.730Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2022-04-28T18:17:19.876Z] ...                                                                      [ 90%]
[2022-04-28T18:17:41.845Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-04-28T18:18:18.789Z] ......                                                                   [ 93%]
[2022-04-28T18:18:23.824Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-04-28T18:21:48.907Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-04-28T18:21:48.908Z] 
[2022-04-28T18:21:48.908Z] =================================== FAILURES ===================================
    
  

@crim-jenkins-bot
Copy link
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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/875/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : new-jupyter-env
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-86.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/756/

NOTEBOOK TEST RESULTS
    
[2022-05-05T02:49:26.399Z] ============================= test session starts ==============================
[2022-05-05T02:49:26.400Z] platform linux -- Python 3.8.13, pytest-7.1.1, pluggy-1.0.0
[2022-05-05T02:49:26.400Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-05-05T02:49:26.400Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-05-05T02:49:26.400Z] collected 244 items
[2022-05-05T02:49:26.400Z] 
[2022-05-05T02:49:33.380Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-05-05T02:50:08.922Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-05-05T02:50:19.488Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-05-05T02:50:29.287Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-05-05T02:50:32.414Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-05-05T02:56:27.716Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 21%]
[2022-05-05T02:56:44.302Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-05-05T02:57:02.625Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-05-05T02:57:27.589Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-05-05T02:57:28.791Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-05-05T02:57:32.192Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .FFFFFF            [ 29%]
[2022-05-05T02:57:39.978Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-05-05T03:01:10.058Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-05-05T03:02:17.774Z] ..............                                                           [ 43%]
[2022-05-05T03:02:27.820Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 45%]
[2022-05-05T03:02:30.589Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 48%]
[2022-05-05T03:02:57.904Z] .................                                                        [ 55%]
[2022-05-05T03:03:06.651Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 57%]
[2022-05-05T03:03:08.553Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-05-05T03:03:19.494Z] ..F....FF.                                                               [ 61%]
[2022-05-05T03:03:32.861Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 65%]
[2022-05-05T03:03:42.774Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 68%]
[2022-05-05T03:04:36.756Z] finch-master/docs/source/notebooks/subset.ipynb .....................    [ 77%]
[2022-05-05T03:04:36.756Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-05-05T03:04:41.494Z] ......                                                                   [ 79%]
[2022-05-05T03:05:28.233Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-05-05T03:05:47.711Z] .............                                                            [ 85%]
[2022-05-05T03:05:57.709Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-05-05T03:07:08.239Z] ....s.                                                                   [ 88%]
[2022-05-05T03:07:23.158Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2022-05-05T03:07:28.371Z] ...                                                                      [ 90%]
[2022-05-05T03:07:54.972Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-05-05T03:08:26.247Z] ......                                                                   [ 93%]
[2022-05-05T03:08:31.285Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-05-05T03:11:51.607Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-05-05T03:11:51.607Z] 
[2022-05-05T03:11:51.607Z] =================================== FAILURES ===================================
    
  

tlvu added a commit to Ouranosinc/PAVICS-e2e-workflow-tests that referenced this pull request May 5, 2022
docker: new build for new XClim and to get Dask dashboard and Panel server app to work

# Overview

Still have to pin `dask` for performance and `shapely` for notebook error.

Dask dashboard and Panel server app work both by manually mapping `http://localhost:<PORT>` to `https://pavics.ouranos.ca/jupyter/user/<USER>/proxy/<PORT>` as seen in screenshots below:

![Screenshot from 2022-04-12 15-20-58](https://user-images.githubusercontent.com/11966697/163259294-97337abd-91e6-4832-b639-d7d2e89c353d.png) 

![Screenshot from 2022-04-12 16-29-06](https://user-images.githubusercontent.com/11966697/163264000-c2d0f993-8d4d-4eeb-8fa7-0cdce454c2f4.png)

The "Render with Panel" green button also works and avoid having to deal with manual URL rewrite:
![Screenshot from 2022-05-04 15-18-03](https://user-images.githubusercontent.com/11966697/166810160-f6989da4-6e8f-4407-8fd5-4ef71770e1f2.png)


## Relevant Changes

```diff
# new
>   - dask-labextension=5.2.0=pyhd8ed1ab_0
>   - jupyter-panel-proxy=0.2.0a2=py_0
>   - jupyter-server-proxy=3.2.1=pyhd8ed1ab_0

# removed, interfere with panel
<     - handcalcs==1.4.1

<   - xclim=0.34.0=pyhd8ed1ab_0
>   - xclim=0.36.0=pyhd8ed1ab_0

<   - cf_xarray=0.6.3=pyhd8ed1ab_0
>   - cf_xarray=0.7.2=pyhd8ed1ab_0

<   - clisops=0.8.0=pyh6c4a22f_0
>   - clisops=0.9.0=pyh6c4a22f_0

# downgrade by clisops
<   - pandas=1.4.1=py38h43a58ef_0
>   - pandas=1.3.5=py38h43a58ef_0

<   - rioxarray=0.10.3=pyhd8ed1ab_0
>   - rioxarray=0.11.1=pyhd8ed1ab_0

<   - nc-time-axis=1.4.0=pyhd8ed1ab_0
>   - nc-time-axis=1.4.1=pyhd8ed1ab_0

<   - roocs-utils=0.5.0=pyh6c4a22f_0
>   - roocs-utils=0.6.1=pyh6c4a22f_0

<   - panel=0.12.7=pyhd8ed1ab_0
>   - panel=0.13.1a2=py_0

<   - plotly=5.6.0=pyhd8ed1ab_0
>   - plotly=5.7.0=pyhd8ed1ab_0
```

## Related Issue / Discussion

- #99
- #100
- PR to deploy this new Jupyter env to PAVICS: bird-house/birdhouse-deploy#241
- bokeh/bokeh#12090
- holoviz/jupyter-panel-proxy#21
- holoviz/panel#3469
- holoviz/panel#3440

## Test

* Deployed as "beta" image in production for bokeh visualization performance regression testing.

* Manual test notebook https://github.com/Ouranosinc/PAVICS-landing/blob/master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb for bokeh visualization performance and it looks fine.

* Jenkins builds: only known subset-user-input.ipynb: ​RemoteDisconnected, `pavics/workflow-tests:220412`: 
  [job-PAVICS-e2e-workflow-tests-new-docker-build-17-consoleText.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/8484558/job-PAVICS-e2e-workflow-tests-new-docker-build-17-consoleText.txt)
  [job-PAVICS-e2e-workflow-tests-new-docker-build-16-consoleText.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/8484559/job-PAVICS-e2e-workflow-tests-new-docker-build-16-consoleText.txt)
  [job-PAVICS-e2e-workflow-tests-new-docker-build-15-consoleText.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/8484560/job-PAVICS-e2e-workflow-tests-new-docker-build-15-consoleText.txt)

* Jenkins build: all passed, `pavics/workflow-tests:220522`:
climex.ipynb 2.5 mins, OK [job-PAVICS-e2e-workflow-tests-new-docker-build-39-consoleText.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/8627256/job-PAVICS-e2e-workflow-tests-new-docker-build-39-consoleText.txt)
climex.ipynb 5 mins, Slow [job-PAVICS-e2e-workflow-tests-new-docker-build-41-consoleText.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/8627258/job-PAVICS-e2e-workflow-tests-new-docker-build-41-consoleText.txt)
climex.ipynb 14 mins, VERY Slow [job-PAVICS-e2e-workflow-tests-new-docker-build-42-consoleText.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/8627789/job-PAVICS-e2e-workflow-tests-new-docker-build-42-consoleText.txt)





## Additional Information

* Full diff `conda env export`:
[220401-220412-conda-env-export.diff.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/8484573/220401-220412-conda-env-export.diff.txt)

  [220401-220502-conda-env-export.diff.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/8627790/220401-220502-conda-env-export.diff.txt)

```
2a3
>   - pyviz/label/dev
8c9
<   - _openmp_mutex=4.5=1_gnu
---
>   - _openmp_mutex=4.5=2_gnu
10,11c11,12
<   - aiobotocore=2.1.2=pyhd8ed1ab_0
<   - aiohttp=3.8.1=py38h497a2fe_0
---
>   - aiobotocore=2.2.0=pyhd8ed1ab_0
>   - aiohttp=3.8.1=py38h0a891b7_1
15,16c16,17
<   - alsa-lib=1.2.3=h516909a_0
<   - ansi2html=1.7.0=py38h578d9bd_0
---
>   - alsa-lib=1.2.3.2=h166bdaf_0
>   - ansi2html=1.7.0=py38h578d9bd_1
20c21
<   - argon2-cffi-bindings=21.2.0=py38h497a2fe_1
---
>   - argon2-cffi-bindings=21.2.0=py38h0a891b7_2
30,31c31,32
<   - bcrypt=3.2.0=py38h497a2fe_2
<   - beautifulsoup4=4.10.0=pyha770c72_0
---
>   - bcrypt=3.2.2=py38h0a891b7_0
>   - beautifulsoup4=4.11.1=pyha770c72_0
34c35
<   - bleach=4.1.0=pyhd8ed1ab_0
---
>   - bleach=5.0.0=pyhd8ed1ab_0
36,37c37,38
<   - blosc=1.21.0=h9c3ff4c_0
<   - bokeh=2.4.2=py38h578d9bd_0
---
>   - blosc=1.21.1=hd32f23e_0
>   - bokeh=2.4.2=py38h578d9bd_1
40,41c41,42
<   - botocore=1.23.24=pyhd8ed1ab_0
<   - bottleneck=1.3.4=py38h3ec907f_0
---
>   - botocore=1.24.21=pyhd8ed1ab_1
>   - bottleneck=1.3.4=py38h71d37f0_1
43,46c44,47
<   - brotli=1.0.9=h7f98852_6
<   - brotli-bin=1.0.9=h7f98852_6
<   - brotli-python=1.0.9=py38h709712a_6
<   - brotlipy=0.7.0=py38h497a2fe_1003
---
>   - brotli=1.0.9=h166bdaf_7
>   - brotli-bin=1.0.9=h166bdaf_7
>   - brotli-python=1.0.9=py38hfa26641_7
>   - brotlipy=0.7.0=py38h0a891b7_1004
60c61
<   - cf_xarray=0.6.3=pyhd8ed1ab_0
---
>   - cf_xarray=0.7.2=pyhd8ed1ab_0
65c66
<   - cftime=1.6.0=py38h3ec907f_0
---
>   - cftime=1.6.0=py38h71d37f0_1
67c68
<   - click=8.1.2=py38h578d9bd_0
---
>   - click=8.1.3=py38h578d9bd_0
71c72
<   - clisops=0.8.0=pyh6c4a22f_0
---
>   - clisops=0.9.0=pyh6c4a22f_0
77,78c78,79
<   - cryptography=36.0.2=py38h2b5fc30_0
<   - curl=7.82.0=h7bff187_0
---
>   - cryptography=36.0.2=py38h2b5fc30_1
>   - curl=7.83.0=h7bff187_0
80c81
<   - cytoolz=0.11.2=py38h497a2fe_1
---
>   - cytoolz=0.11.2=py38h0a891b7_2
84c85,86
<   - datashader=0.13.0=pyh6c4a22f_0
---
>   - dask-labextension=5.2.0=pyhd8ed1ab_0
>   - datashader=0.14.0=pyh6c4a22f_0
87c89
<   - debugpy=1.5.1=py38h709712a_0
---
>   - debugpy=1.6.0=py38hfa26641_0
110,111c112,113
<   - flask=2.1.1=pyhd8ed1ab_0
<   - flask-compress=1.11=pyhd8ed1ab_0
---
>   - flask=2.1.2=pyhd8ed1ab_0
>   - flask-compress=1.12=pyhd8ed1ab_0
118c120
<   - fontconfig=2.13.96=h8e229c2_2
---
>   - fontconfig=2.14.0=h8e229c2_0
121c123
<   - fonttools=4.31.2=py38h0a891b7_0
---
>   - fonttools=4.33.3=py38h0a891b7_0
126c128
<   - fsspec=2022.2.0=pyhd8ed1ab_0
---
>   - fsspec=2022.3.0=pyhd8ed1ab_0
128c130
<   - future=0.18.2=py38h578d9bd_4
---
>   - future=0.18.2=py38h578d9bd_5
130c132
<   - gcsfs=2022.2.0=pyhd8ed1ab_0
---
>   - gcsfs=2022.3.0=pyhd8ed1ab_0
145c147
<   - google-auth=2.6.2=pyh6c4a22f_0
---
>   - google-auth=2.6.6=pyh6c4a22f_0
149c151
<   - google-crc32c=1.1.2=py38h8838a9a_2
---
>   - google-crc32c=1.1.2=py38h57c428a_3
152c154
<   - greenlet=1.1.2=py38h709712a_1
---
>   - greenlet=1.1.2=py38hfa26641_2
166c168
<   - identify=2.4.12=pyhd8ed1ab_0
---
>   - identify=2.5.0=pyhd8ed1ab_0
168,169c170,171
<   - imagecodecs-lite=2019.12.3=py38h6c62de6_4
<   - imageio=2.16.1=pyhcf75d05_0
---
>   - imagecodecs-lite=2019.12.3=py38h71d37f0_5
>   - imageio=2.18.0=pyhcf75d05_0
172c174
<   - importlib_resources=5.6.0=pyhd8ed1ab_0
---
>   - importlib_resources=5.7.1=pyhd8ed1ab_0
179,181c181,183
<   - ipykernel=6.11.0=py38h7f3c49e_0
<   - ipyleaflet=0.15.0=pyhd8ed1ab_3
<   - ipython=8.2.0=py38h578d9bd_0
---
>   - ipykernel=6.13.0=py38h7f3c49e_0
>   - ipyleaflet=0.16.0=pyhd8ed1ab_3
>   - ipython=8.3.0=py38h578d9bd_0
187c189
<   - jedi=0.18.1=py38h578d9bd_0
---
>   - jedi=0.18.1=py38h578d9bd_1
189c191
<   - jmespath=0.10.0=pyh9f0ad1d_0
---
>   - jmespath=1.0.0=pyhd8ed1ab_0
191c193
<   - jpeg=9e=h7f98852_0
---
>   - jpeg=9e=h166bdaf_1
197,198c199,201
<   - jupyter-archive=3.3.0=pyhd8ed1ab_1
<   - jupyter-dash=0.4.1=pyhd8ed1ab_2
---
>   - jupyter-archive=3.3.1=pyhd8ed1ab_0
>   - jupyter-dash=0.4.2=pyhd8ed1ab_1
>   - jupyter-panel-proxy=0.2.0a2=py_0
200a204
>   - jupyter-server-proxy=3.2.1=pyhd8ed1ab_0
202c206
<   - jupyter_client=7.2.1=pyhd8ed1ab_0
---
>   - jupyter_client=7.3.0=pyhd8ed1ab_0
205c209
<   - jupyter_server=1.16.0=pyhd8ed1ab_1
---
>   - jupyter_server=1.17.0=pyhd8ed1ab_0
207,210c211,214
<   - jupyterhub=2.2.2=hd8ed1ab_0
<   - jupyterhub-base=2.2.2=pyhd8ed1ab_0
<   - jupyterlab=3.3.2=pyhd8ed1ab_0
<   - jupyterlab-git=0.36.0=pyhd8ed1ab_0
---
>   - jupyterhub=2.2.2=pyhd8ed1ab_1
>   - jupyterhub-base=2.2.2=pyhd8ed1ab_1
>   - jupyterlab=3.3.4=pyhd8ed1ab_0
>   - jupyterlab-git=0.37.1=pyhd8ed1ab_0
213,214c217,218
<   - jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
<   - jupyterlab_server=2.12.0=pyhd8ed1ab_0
---
>   - jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
>   - jupyterlab_server=2.13.0=pyhd8ed1ab_1
216c220
<   - jupytext=1.13.7=pyhd0ecf6b_0
---
>   - jupytext=1.13.8=pyh4b9bcc7_0
219c223
<   - kiwisolver=1.4.2=py38h43d8883_0
---
>   - kiwisolver=1.4.2=py38h43d8883_1
221c225
<   - lazy-object-proxy=1.7.1=py38h497a2fe_0
---
>   - lazy-object-proxy=1.7.1=py38h0a891b7_1
227,231c231,235
<   - libblas=3.9.0=13_linux64_openblas
<   - libbrotlicommon=1.0.9=h7f98852_6
<   - libbrotlidec=1.0.9=h7f98852_6
<   - libbrotlienc=1.0.9=h7f98852_6
<   - libcblas=3.9.0=13_linux64_openblas
---
>   - libblas=3.9.0=14_linux64_openblas
>   - libbrotlicommon=1.0.9=h166bdaf_7
>   - libbrotlidec=1.0.9=h166bdaf_7
>   - libbrotlienc=1.0.9=h166bdaf_7
>   - libcblas=3.9.0=14_linux64_openblas
233c237
<   - libcf=1.0.3=py38h80f51ce_113
---
>   - libcf=1.0.3=py38h0c3d773_114
236c240
<   - libcurl=7.82.0=h7bff187_0
---
>   - libcurl=7.83.0=h7bff187_0
246c250
<   - libgcc-ng=11.2.0=h1d223b6_14
---
>   - libgcc-ng=11.2.0=h1d223b6_16
248,249c252,253
<   - libgfortran-ng=11.2.0=h69a702a_14
<   - libgfortran5=11.2.0=h5c6108e_14
---
>   - libgfortran-ng=11.2.0=h69a702a_16
>   - libgfortran5=11.2.0=h5c6108e_16
252c256
<   - libgomp=11.2.0=h1d223b6_14
---
>   - libgomp=11.2.0=h1d223b6_16
256c260
<   - liblapack=3.9.0=13_linux64_openblas
---
>   - liblapack=3.9.0=14_linux64_openblas
259c263
<   - libnetcdf=4.8.1=mpi_mpich_h319fa22_1
---
>   - libnetcdf=4.8.1=mpi_mpich_hcdf9059_2
263c267
<   - libopenblas=0.3.18=pthreads_h8fe5266_0
---
>   - libopenblas=0.3.20=pthreads_h78a6416_0
274c278
<   - libstdcxx-ng=11.2.0=he4da1e4_14
---
>   - libstdcxx-ng=11.2.0=he4da1e4_16
288,291c292,296
<   - llvmlite=0.38.0=py38h4630a5e_0
<   - locket=0.2.0=py_2
<   - lxml=4.8.0=py38h0a891b7_1
<   - lz4=3.1.10=py38hebdc3cf_0
---
>   - llvmlite=0.38.0=py38h38d86a4_1
>   - locket=1.0.0=pyhd8ed1ab_0
>   - loguru=0.6.0=py38h578d9bd_1
>   - lxml=4.8.0=py38h0a891b7_2
>   - lz4=4.0.0=py38h1bf946c_1
294c299
<   - mako=1.2.0=pyhd8ed1ab_0
---
>   - mako=1.2.0=pyhd8ed1ab_1
298c303
<   - markdown-it-py=1.1.0=pyhd8ed1ab_0
---
>   - markdown-it-py=2.1.0=pyhd8ed1ab_0
303a309
>   - mdurl=0.1.0=pyhd8ed1ab_0
308,309c314,315
<   - mpi4py=3.1.3=py38he865349_0
<   - mpich=4.0.1=h846660c_100
---
>   - mpi4py=3.1.3=py38h97ac3a3_1
>   - mpich=4.0.2=h846660c_100
311c317
<   - multidict=6.0.2=py38h497a2fe_0
---
>   - multidict=6.0.2=py38h0a891b7_1
315,316c321,322
<   - mysql-common=8.0.28=haf5c9bc_2
<   - mysql-libs=8.0.28=h28c427c_2
---
>   - mysql-common=8.0.29=haf5c9bc_0
>   - mysql-libs=8.0.29=h28c427c_0
319,320c325,327
<   - nbconvert=6.4.5=py38h578d9bd_0
<   - nbconvert-core=6.4.5=pyhd8ed1ab_1
---
>   - nbconvert=6.5.0=pyhd8ed1ab_0
>   - nbconvert-core=6.5.0=pyhd8ed1ab_0
>   - nbconvert-pandoc=6.5.0=pyhd8ed1ab_0
322c329
<   - nbformat=5.2.0=pyhd8ed1ab_0
---
>   - nbformat=5.3.0=pyhd8ed1ab_0
325,327c332,334
<   - nc-time-axis=1.4.0=pyhd8ed1ab_0
<   - ncurses=6.3=h9c3ff4c_0
<   - nest-asyncio=1.5.4=pyhd8ed1ab_0
---
>   - nc-time-axis=1.4.1=pyhd8ed1ab_0
>   - ncurses=6.3=h27087fc_1
>   - nest-asyncio=1.5.5=pyhd8ed1ab_0
332c339
<   - networkx=2.7.1=pyhd8ed1ab_1
---
>   - networkx=2.8=pyhd8ed1ab_0
335c342
<   - notebook=6.4.10=pyha770c72_0
---
>   - notebook=6.4.11=pyha770c72_0
341c348
<   - numpy=1.21.5=py38h87f13fb_0
---
>   - numpy=1.21.6=py38h1d589f8_0
343c350
<   - openblas=0.3.18=pthreads_h4748800_0
---
>   - openblas=0.3.20=pthreads_h320a7e8_0
351,352c358,359
<   - pandas=1.4.1=py38h43a58ef_0
<   - pandoc=2.17.1.1=ha770c72_0
---
>   - pandas=1.3.5=py38h43a58ef_0
>   - pandoc=2.18=ha770c72_0
354c361
<   - panel=0.12.7=pyhd8ed1ab_0
---
>   - panel=0.13.1a2=py_0
356c363
<   - paramiko=2.10.3=pyhd8ed1ab_0
---
>   - paramiko=2.10.4=pyhd8ed1ab_0
363,364c370,371
<   - pillow=9.0.1=py38h0ee0e06_2
<   - pint=0.18=pyhd8ed1ab_0
---
>   - pillow=9.1.0=py38h0ee0e06_2
>   - pint=0.19.2=pyhd8ed1ab_0
368c375
<   - plotly=5.6.0=pyhd8ed1ab_0
---
>   - plotly=5.7.0=pyhd8ed1ab_0
374c381
<   - pre-commit=2.17.0=py38h578d9bd_0
---
>   - pre-commit=2.18.1=py38h578d9bd_1
376,378c383,385
<   - prometheus_client=0.13.1=pyhd8ed1ab_0
<   - prompt-toolkit=3.0.27=pyha770c72_0
<   - prompt_toolkit=3.0.27=hd8ed1ab_0
---
>   - prometheus_client=0.14.1=pyhd8ed1ab_0
>   - prompt-toolkit=3.0.29=pyha770c72_0
>   - prompt_toolkit=3.0.29=hd8ed1ab_0
380c387
<   - protobuf=3.20.0=py38hfa26641_0
---
>   - protobuf=3.20.0=py38hfa26641_4
382c389
<   - psutil=5.9.0=py38h497a2fe_0
---
>   - psutil=5.9.0=py38h0a891b7_1
392,393c399,400
<   - pycurl=7.45.1=py38h61f0cdf_0
<   - pydantic=1.9.0=py38h497a2fe_0
---
>   - pycurl=7.45.1=py38h61f0cdf_1
>   - pydantic=1.9.0=py38h0a891b7_1
396c403
<   - pygments=2.11.2=pyhd8ed1ab_0
---
>   - pygments=2.12.0=pyhd8ed1ab_0
398c405
<   - pynacl=1.5.0=py38h497a2fe_0
---
>   - pynacl=1.5.0=py38h0a891b7_1
400c407
<   - pyparsing=3.0.7=pyhd8ed1ab_0
---
>   - pyparsing=3.0.8=pyhd8ed1ab_0
407,410c414,417
<   - pyrsistent=0.18.1=py38h497a2fe_0
<   - pyshp=2.2.0=pyhd8ed1ab_0
<   - pysocks=1.7.1=py38h578d9bd_4
<   - pytest=7.1.1=py38h578d9bd_1
---
>   - pyrsistent=0.18.1=py38h0a891b7_1
>   - pyshp=2.3.0=pyhd8ed1ab_0
>   - pysocks=1.7.1=py38h578d9bd_5
>   - pytest=7.1.2=py38h578d9bd_0
413c420,421
<   - python-eccodes=1.4.0=py38h71d37f0_0
---
>   - python-eccodes=1.4.0=py38h71d37f0_1
>   - python-fastjsonschema=2.15.3=pyhd8ed1ab_0
419c427
<   - pywavelets=1.3.0=py38h3ec907f_0
---
>   - pywavelets=1.3.0=py38h71d37f0_1
421c429
<   - pyzmq=22.3.0=py38h2035c66_1
---
>   - pyzmq=22.3.0=py38hfc09fa9_2
425c433
<   - qtpy=2.0.1=pyhd8ed1ab_0
---
>   - qtpy=2.1.0=pyhd8ed1ab_0
434,435c442,443
<   - rioxarray=0.10.3=pyhd8ed1ab_0
<   - roocs-utils=0.5.0=pyh6c4a22f_0
---
>   - rioxarray=0.11.1=pyhd8ed1ab_0
>   - roocs-utils=0.6.1=pyh6c4a22f_0
437,440c445,448
<   - rtree=0.9.7=py38h02d302b_3
<   - ruamel.yaml=0.17.21=py38h497a2fe_0
<   - ruamel.yaml.clib=0.2.6=py38h497a2fe_0
<   - s3fs=2022.2.0=pyhd8ed1ab_1
---
>   - rtree=1.0.0=py38h02d302b_1
>   - ruamel.yaml=0.17.21=py38h0a891b7_1
>   - ruamel.yaml.clib=0.2.6=py38h0a891b7_1
>   - s3fs=2022.3.0=pyhd8ed1ab_0
446a455
>   - setuptools=59.8.0=py38h578d9bd_1
447a457
>   - simpervisor=0.4=pyhd8ed1ab_0
450a461
>   - snappy=1.1.8=he1b5a44_3
456,457c467,468
<   - sqlalchemy=1.4.33=py38h0a891b7_0
<   - sqlite=3.37.1=h4ff8645_0
---
>   - sqlalchemy=1.4.36=py38h0a891b7_0
>   - sqlite=3.38.3=h4ff8645_0
462,463c473
<   - terminado=0.13.3=py38h578d9bd_0
<   - testpath=0.6.0=pyhd8ed1ab_0
---
>   - terminado=0.13.3=py38h578d9bd_1
467a478
>   - tinycss2=1.1.1=pyhd8ed1ab_0
473c484
<   - tqdm=4.63.1=pyhd8ed1ab_0
---
>   - tqdm=4.64.0=pyhd8ed1ab_0
476c487
<   - trio=0.20.0=py38h578d9bd_0
---
>   - trio=0.20.0=py38h578d9bd_1
478,479c489,490
<   - typing-extensions=4.1.1=hd8ed1ab_0
<   - typing_extensions=4.1.1=pyha770c72_0
---
>   - typing-extensions=4.2.0=hd8ed1ab_1
>   - typing_extensions=4.2.0=pyha770c72_1
482,483c493,494
<   - ukkonen=1.0.1=py38h1fd1430_1
<   - unicodedata2=14.0.0=py38h497a2fe_0
---
>   - ukkonen=1.0.1=py38h43d8883_2
>   - unicodedata2=14.0.0=py38h0a891b7_1
485c496
<   - virtualenv=20.14.0=py38h578d9bd_1
---
>   - virtualenv=20.14.1=py38h578d9bd_0
491,492c502,503
<   - websockets=10.2=py38h0a891b7_0
<   - werkzeug=2.1.0=pyhd8ed1ab_0
---
>   - websockets=10.3=py38h0a891b7_0
>   - werkzeug=2.1.2=pyhd8ed1ab_0
496c507
<   - wrapt=1.14.0=py38h0a891b7_0
---
>   - wrapt=1.14.1=py38h0a891b7_0
499c510
<   - xclim=0.34.0=pyhd8ed1ab_0
---
>   - xclim=0.36.0=pyhd8ed1ab_0
502,503c513,514
<   - xeus=2.4.0=hab3612f_0
<   - xeus-python=0.13.6=py38h9f61dbb_2
---
>   - xeus=2.4.1=h70bab47_0
>   - xeus-python=0.13.7=py38h9f61dbb_0
531c542
<   - xyzservices=2022.3.0=pyhd8ed1ab_0
---
>   - xyzservices=2022.4.0=pyhd8ed1ab_0
534,535c545,546
<   - yarl=1.7.2=py38h497a2fe_1
<   - zarr=2.11.1=pyhd8ed1ab_0
---
>   - yarl=1.7.2=py38h0a891b7_2
>   - zarr=2.11.3=pyhd8ed1ab_0
537,538c548,549
<   - zict=2.1.0=pyhd8ed1ab_0
<   - zipp=3.7.0=pyhd8ed1ab_1
---
>   - zict=2.2.0=pyhd8ed1ab_0
>   - zipp=3.8.0=pyhd8ed1ab_0
545,546d555
<     - handcalcs==1.4.1
<     - innerscope==0.5.1
550d558
<     - more-itertools==8.12.0
555d562
<     - setuptools==61.3.0
```


* Full new `conda env export`:
[220412-conda-env-export.yml.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/8484577/220412-conda-env-export.yml.txt)

  [220502-conda-env-export.yml.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/8627792/220502-conda-env-export.yml.txt)

```
name: birdy
channels:
  - pyviz/label/dev
  - cdat
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - affine=2.3.1=pyhd8ed1ab_0
  - aiobotocore=2.2.0=pyhd8ed1ab_0
  - aiohttp=3.8.1=py38h0a891b7_1
  - aioitertools=0.10.0=pyhd8ed1ab_0
  - aiosignal=1.2.0=pyhd8ed1ab_0
  - alembic=1.7.7=pyhd8ed1ab_0
  - alsa-lib=1.2.3.2=h166bdaf_0
  - ansi2html=1.7.0=py38h578d9bd_1
  - anyio=3.5.0=py38h578d9bd_0
  - appdirs=1.4.4=pyh9f0ad1d_0
  - argon2-cffi=21.3.0=pyhd8ed1ab_0
  - argon2-cffi-bindings=21.2.0=py38h0a891b7_2
  - asciitree=0.3.3=py_2
  - asttokens=2.0.5=pyhd8ed1ab_0
  - async-timeout=4.0.2=pyhd8ed1ab_0
  - async_generator=1.10=py_0
  - attrs=21.4.0=pyhd8ed1ab_0
  - babel=2.9.1=pyh44b312d_0
  - backcall=0.2.0=pyh9f0ad1d_0
  - backports=1.0=py_2
  - backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
  - bcrypt=3.2.2=py38h0a891b7_0
  - beautifulsoup4=4.11.1=pyha770c72_0
  - bias_correction=0.4=pyhd8ed1ab_0
  - birdy=0.8.1=pyh6c4a22f_1
  - bleach=5.0.0=pyhd8ed1ab_0
  - blinker=1.4=py_1
  - blosc=1.21.1=hd32f23e_0
  - bokeh=2.4.2=py38h578d9bd_1
  - boltons=21.0.0=pyhd8ed1ab_0
  - boost-cpp=1.74.0=h312852a_4
  - botocore=1.24.21=pyhd8ed1ab_1
  - bottleneck=1.3.4=py38h71d37f0_1
  - branca=0.4.2=pyhd8ed1ab_0
  - brotli=1.0.9=h166bdaf_7
  - brotli-bin=1.0.9=h166bdaf_7
  - brotli-python=1.0.9=py38hfa26641_7
  - brotlipy=0.7.0=py38h0a891b7_1004
  - bzip2=1.0.8=h7f98852_4
  - c-ares=1.18.1=h7f98852_0
  - ca-certificates=2021.10.8=ha878542_0
  - cached-property=1.5.2=hd8ed1ab_1
  - cached_property=1.5.2=pyha770c72_1
  - cachetools=5.0.0=pyhd8ed1ab_0
  - cairo=1.16.0=h6cf1ce9_1008
  - cartopy=0.20.1=py38hf9a4893_1
  - cdat_info=8.2.1=pyhd8ed1ab_2
  - cdms2=3.1.5=py38hc1ef740_14
  - cdtime=3.1.4=py38hc54c017_7
  - certifi=2021.10.8=py38h578d9bd_2
  - certipy=0.1.3=py_0
  - cf_xarray=0.7.2=pyhd8ed1ab_0
  - cffi=1.15.0=py38h3931269_0
  - cfgrib=0.9.10.1=pyhd8ed1ab_0
  - cfgv=3.3.1=pyhd8ed1ab_0
  - cfitsio=3.470=hb418390_7
  - cftime=1.6.0=py38h71d37f0_1
  - charset-normalizer=2.0.12=pyhd8ed1ab_0
  - click=8.1.3=py38h578d9bd_0
  - click-plugins=1.1.1=py_0
  - cligj=0.7.2=pyhd8ed1ab_1
  - climpred=2.2.0=pyhd8ed1ab_0
  - clisops=0.9.0=pyh6c4a22f_0
  - cloudpickle=2.0.0=pyhd8ed1ab_0
  - colorama=0.4.4=pyh9f0ad1d_0
  - colorcet=3.0.0=pyhd8ed1ab_0
  - configurable-http-proxy=4.5.0=node16_h3b247e2_2
  - coverage=6.3.2=py38h0a891b7_2
  - cryptography=36.0.2=py38h2b5fc30_1
  - curl=7.83.0=h7bff187_0
  - cycler=0.11.0=pyhd8ed1ab_0
  - cytoolz=0.11.2=py38h0a891b7_2
  - dash=2.3.1=pyhd8ed1ab_0
  - dask=2022.1.0=pyhd8ed1ab_0
  - dask-core=2022.1.0=pyhd8ed1ab_0
  - dask-labextension=5.2.0=pyhd8ed1ab_0
  - datashader=0.14.0=pyh6c4a22f_0
  - datashape=0.5.4=py_1
  - dbus=1.13.6=h5008d03_3
  - debugpy=1.6.0=py38hfa26641_0
  - decorator=5.1.1=pyhd8ed1ab_0
  - defusedxml=0.7.1=pyhd8ed1ab_0
  - descartes=1.1.0=py_4
  - distarray=2.12.2=pyhd8ed1ab_2
  - distlib=0.3.4=pyhd8ed1ab_0
  - distributed=2022.1.0=py38h578d9bd_0
  - docopt=0.6.2=py_1
  - docrep=0.3.2=pyh44b312d_0
  - eccodes=2.25.0=hc08acdf_0
  - elfutils=0.186=he364ef2_0
  - entrypoints=0.4=pyhd8ed1ab_0
  - eofs=1.4.0=py_0
  - esgf-compute-api=2.3.9=0_h1234567_
  - esmf=8.2.0=mpi_mpich_h4975321_100
  - esmpy=8.2.0=mpi_mpich_py38h9147699_101
  - executing=0.8.3=pyhd8ed1ab_0
  - expat=2.4.8=h27087fc_0
  - fasteners=0.17.3=pyhd8ed1ab_0
  - fastprogress=1.0.2=pyhd8ed1ab_0
  - filelock=3.6.0=pyhd8ed1ab_0
  - findlibs=0.0.2=pyhd8ed1ab_0
  - fiona=1.8.20=py38hbb147eb_2
  - flask=2.1.2=pyhd8ed1ab_0
  - flask-compress=1.12=pyhd8ed1ab_0
  - flit-core=3.7.1=pyhd8ed1ab_0
  - folium=0.12.1.post1=pyhd8ed1ab_1
  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
  - font-ttf-inconsolata=3.000=h77eed37_0
  - font-ttf-source-code-pro=2.038=h77eed37_0
  - font-ttf-ubuntu=0.83=hab24e00_0
  - fontconfig=2.14.0=h8e229c2_0
  - fonts-conda-ecosystem=1=0
  - fonts-conda-forge=1=0
  - fonttools=4.33.3=py38h0a891b7_0
  - freeglut=3.2.2=h9c3ff4c_1
  - freetype=2.10.4=h0708190_1
  - freexl=1.0.6=h7f98852_0
  - frozenlist=1.3.0=py38h0a891b7_1
  - fsspec=2022.3.0=pyhd8ed1ab_0
  - funcsigs=1.0.2=py_3
  - future=0.18.2=py38h578d9bd_5
  - g2clib=1.6.3=heb9ad7a_1
  - gcsfs=2022.3.0=pyhd8ed1ab_0
  - gdal=3.3.3=py38hcf2042a_0
  - geckodriver=0.30.0=h3146498_0
  - geopandas=0.10.2=pyhd8ed1ab_1
  - geopandas-base=0.10.2=pyha770c72_1
  - geos=3.9.1=h9c3ff4c_2
  - geotiff=1.7.0=hcfb7246_3
  - geoviews=1.9.5=pyhd8ed1ab_0
  - geoviews-core=1.9.5=pyha770c72_0
  - gettext=0.19.8.1=h73d1719_1008
  - giflib=5.2.1=h36c2ea0_2
  - gitdb=4.0.9=pyhd8ed1ab_0
  - gitpython=3.1.27=pyhd8ed1ab_0
  - gnutls=3.6.13=h85f3911_1
  - google-api-core=2.5.0=pyhd8ed1ab_0
  - google-auth=2.6.6=pyh6c4a22f_0
  - google-auth-oauthlib=0.5.1=pyhd8ed1ab_0
  - google-cloud-core=2.2.2=pyh6c4a22f_0
  - google-cloud-storage=2.1.0=pyh6c4a22f_0
  - google-crc32c=1.1.2=py38h57c428a_3
  - google-resumable-media=2.1.0=pyh6c4a22f_0
  - googleapis-common-protos=1.56.0=py38h578d9bd_0
  - greenlet=1.1.2=py38hfa26641_2
  - grpcio=1.45.0=py38ha0cdfde_0
  - gst-plugins-base=1.18.5=hf529b03_3
  - gstreamer=1.18.5=h9f60fe5_3
  - h11=0.13.0=pyhd8ed1ab_0
  - h5netcdf=1.0.0=pyhd8ed1ab_0
  - h5py=3.6.0=nompi_py38hfbb2109_100
  - haversine=2.5.1=pyhd8ed1ab_0
  - hdf4=4.2.15=h10796ff_3
  - hdf5=1.12.1=mpi_mpich_h08b82f9_4
  - heapdict=1.0.1=py_0
  - holoviews=1.14.8=pyhd8ed1ab_0
  - hvplot=0.7.3=pyh6c4a22f_0
  - icu=68.2=h9c3ff4c_0
  - identify=2.5.0=pyhd8ed1ab_0
  - idna=3.3=pyhd8ed1ab_0
  - imagecodecs-lite=2019.12.3=py38h71d37f0_5
  - imageio=2.18.0=pyhcf75d05_0
  - importlib-metadata=4.11.3=py38h578d9bd_1
  - importlib_metadata=4.11.3=hd8ed1ab_1
  - importlib_resources=5.7.1=pyhd8ed1ab_0
  - iniconfig=1.1.1=pyh9f0ad1d_0
  - intake=0.6.5=pyhd8ed1ab_0
  - intake-esm=2021.8.17=pyhd8ed1ab_0
  - intake-geopandas=0.4.0=pyhd8ed1ab_0
  - intake-thredds=2021.6.16=pyhd8ed1ab_0
  - intake-xarray=0.6.0=pyhd8ed1ab_0
  - ipykernel=6.13.0=py38h7f3c49e_0
  - ipyleaflet=0.16.0=pyhd8ed1ab_3
  - ipython=8.3.0=py38h578d9bd_0
  - ipython_genutils=0.2.0=py_1
  - ipywidgets=7.7.0=pyhd8ed1ab_0
  - itsdangerous=2.1.2=pyhd8ed1ab_0
  - jasper=2.0.33=ha77e612_0
  - jbig=2.1=h7f98852_2003
  - jedi=0.18.1=py38h578d9bd_1
  - jinja2=3.1.1=pyhd8ed1ab_0
  - jmespath=1.0.0=pyhd8ed1ab_0
  - joblib=1.1.0=pyhd8ed1ab_0
  - jpeg=9e=h166bdaf_1
  - json-c=0.15=h98cffda_0
  - json5=0.9.5=pyh9f0ad1d_0
  - jsonpickle=2.1.0=pyhd8ed1ab_0
  - jsonschema=4.4.0=pyhd8ed1ab_0
  - jupyter=1.0.0=py38h578d9bd_7
  - jupyter-archive=3.3.1=pyhd8ed1ab_0
  - jupyter-dash=0.4.2=pyhd8ed1ab_1
  - jupyter-panel-proxy=0.2.0a2=py_0
  - jupyter-resource-usage=0.5.1=pyhd8ed1ab_0
  - jupyter-server-mathjax=0.2.5=pyhc268e32_0
  - jupyter-server-proxy=3.2.1=pyhd8ed1ab_0
  - jupyter_bokeh=3.0.4=pyhd8ed1ab_0
  - jupyter_client=7.3.0=pyhd8ed1ab_0
  - jupyter_console=6.4.3=pyhd8ed1ab_0
  - jupyter_core=4.9.2=py38h578d9bd_0
  - jupyter_server=1.17.0=pyhd8ed1ab_0
  - jupyter_telemetry=0.1.0=pyhd8ed1ab_1
  - jupyterhub=2.2.2=pyhd8ed1ab_1
  - jupyterhub-base=2.2.2=pyhd8ed1ab_1
  - jupyterlab=3.3.4=pyhd8ed1ab_0
  - jupyterlab-git=0.37.1=pyhd8ed1ab_0
  - jupyterlab-system-monitor=0.8.0=pyhd8ed1ab_1
  - jupyterlab-topbar=0.6.1=pyhd8ed1ab_2
  - jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
  - jupyterlab_server=2.13.0=pyhd8ed1ab_1
  - jupyterlab_widgets=1.1.0=pyhd8ed1ab_0
  - jupytext=1.13.8=pyh4b9bcc7_0
  - kealib=1.4.14=h87e4c3c_3
  - keyutils=1.6.1=h166bdaf_0
  - kiwisolver=1.4.2=py38h43d8883_1
  - krb5=1.19.3=h3790be6_0
  - lazy-object-proxy=1.7.1=py38h0a891b7_1
  - lcms2=2.12=hddcbb42_0
  - ld_impl_linux-64=2.36.1=hea4e1c9_2
  - lerc=3.0=h9c3ff4c_0
  - libaec=1.0.6=h9c3ff4c_0
  - libarchive=3.5.2=hccf745f_1
  - libblas=3.9.0=14_linux64_openblas
  - libbrotlicommon=1.0.9=h166bdaf_7
  - libbrotlidec=1.0.9=h166bdaf_7
  - libbrotlienc=1.0.9=h166bdaf_7
  - libcblas=3.9.0=14_linux64_openblas
  - libcdms=3.1.2=h3bdf4ba_117
  - libcf=1.0.3=py38h0c3d773_114
  - libclang=11.1.0=default_ha53f305_1
  - libcrc32c=1.1.2=h9c3ff4c_0
  - libcurl=7.83.0=h7bff187_0
  - libdap4=3.20.6=hd7c4107_2
  - libdeflate=1.10=h7f98852_0
  - libdrm=2.4.109=h7f98852_0
  - libdrs=3.1.2=hf593df3_118
  - libdrs_f=3.1.2=h7e76ec7_114
  - libedit=3.1.20191231=he28a2e2_2
  - libev=4.33=h516909a_1
  - libevent=2.1.10=h9b69904_4
  - libffi=3.4.2=h7f98852_5
  - libgcc-ng=11.2.0=h1d223b6_16
  - libgdal=3.3.3=h356f897_0
  - libgfortran-ng=11.2.0=h69a702a_16
  - libgfortran5=11.2.0=h5c6108e_16
  - libglib=2.70.2=h174f98d_4
  - libglu=9.0.0=he1b5a44_1001
  - libgomp=11.2.0=h1d223b6_16
  - libiconv=1.16=h516909a_0
  - libidn2=2.3.2=h7f98852_0
  - libkml=1.3.0=h238a007_1014
  - liblapack=3.9.0=14_linux64_openblas
  - libllvm11=11.1.0=hf817b99_3
  - libmicrohttpd=0.9.75=h7f98852_0
  - libnetcdf=4.8.1=mpi_mpich_hcdf9059_2
  - libnghttp2=1.47.0=h727a467_0
  - libnsl=2.0.0=h7f98852_0
  - libogg=1.3.4=h7f98852_1
  - libopenblas=0.3.20=pthreads_h78a6416_0
  - libopus=1.3.1=h7f98852_1
  - libpciaccess=0.16=h516909a_0
  - libpng=1.6.37=h21135ba_2
  - libpq=13.5=hd57d9b9_1
  - libprotobuf=3.20.0=h6239696_0
  - librttopo=1.1.0=h1185371_6
  - libsodium=1.0.18=h36c2ea0_1
  - libspatialindex=1.9.3=h9c3ff4c_4
  - libspatialite=5.0.1=h8796b1e_9
  - libssh2=1.10.0=ha56f1ee_2
  - libstdcxx-ng=11.2.0=he4da1e4_16
  - libtiff=4.3.0=h542a066_3
  - libunistring=0.9.10=h7f98852_0
  - libuuid=2.32.1=h7f98852_1000
  - libuv=1.40.0=h7f98852_0
  - libvorbis=1.3.7=h9c3ff4c_0
  - libwebp=1.2.2=h3452ae3_0
  - libwebp-base=1.2.2=h7f98852_1
  - libxcb=1.13=h7f98852_1004
  - libxkbcommon=1.0.3=he3ba5ed_0
  - libxml2=2.9.12=h72842e0_0
  - libxslt=1.1.33=h15afd5d_2
  - libzip=1.8.0=h4de3113_1
  - libzlib=1.2.11=h166bdaf_1014
  - llvmlite=0.38.0=py38h38d86a4_1
  - locket=1.0.0=pyhd8ed1ab_0
  - loguru=0.6.0=py38h578d9bd_1
  - lxml=4.8.0=py38h0a891b7_2
  - lz4=4.0.0=py38h1bf946c_1
  - lz4-c=1.9.3=h9c3ff4c_1
  - lzo=2.10=h516909a_1000
  - mako=1.2.0=pyhd8ed1ab_1
  - mamba_gator=5.1.2=pyhd8ed1ab_0
  - mapclassify=2.4.3=pyhd8ed1ab_0
  - markdown=3.3.6=pyhd8ed1ab_0
  - markdown-it-py=2.1.0=pyhd8ed1ab_0
  - markupsafe=2.1.1=py38h0a891b7_1
  - matplotlib=3.5.1=py38h578d9bd_0
  - matplotlib-base=3.5.1=py38hf4fb855_0
  - matplotlib-inline=0.1.3=pyhd8ed1ab_0
  - mdit-py-plugins=0.3.0=pyhd8ed1ab_0
  - mdurl=0.1.0=pyhd8ed1ab_0
  - memory_profiler=0.60.0=pyhd8ed1ab_0
  - mesalib=21.2.5=h0e4506f_3
  - mistune=0.8.4=py38h497a2fe_1005
  - mpi=1.0=mpich
  - mpi4py=3.1.3=py38h97ac3a3_1
  - mpich=4.0.2=h846660c_100
  - msgpack-python=1.0.3=py38h43d8883_1
  - multidict=6.0.2=py38h0a891b7_1
  - multipledispatch=0.6.0=py_0
  - munch=2.5.0=py_0
  - munkres=1.1.4=pyh9f0ad1d_0
  - mysql-common=8.0.29=haf5c9bc_0
  - mysql-libs=8.0.29=h28c427c_0
  - nbclassic=0.3.7=pyhd8ed1ab_0
  - nbclient=0.5.13=pyhd8ed1ab_0
  - nbconvert=6.5.0=pyhd8ed1ab_0
  - nbconvert-core=6.5.0=pyhd8ed1ab_0
  - nbconvert-pandoc=6.5.0=pyhd8ed1ab_0
  - nbdime=3.1.1=pyhd8ed1ab_0
  - nbformat=5.3.0=pyhd8ed1ab_0
  - nbresuse=0.4.0=pyhd8ed1ab_0
  - nbval=0.9.6=pyh9f0ad1d_0
  - nc-time-axis=1.4.1=pyhd8ed1ab_0
  - ncurses=6.3=h27087fc_1
  - nest-asyncio=1.5.5=pyhd8ed1ab_0
  - nested_dict=1.61=pyhd3deb0d_0
  - netcdf-fortran=4.5.4=mpi_mpich_h1364a43_0
  - netcdf4=1.5.8=nompi_py38h2823cc8_101
  - nettle=3.6=he412f7d_0
  - networkx=2.8=pyhd8ed1ab_0
  - nodeenv=1.6.0=pyhd8ed1ab_0
  - nodejs=16.13.1=hb931c9a_0
  - notebook=6.4.11=pyha770c72_0
  - notebook-shim=0.1.0=pyhd8ed1ab_0
  - nspr=4.32=h9c3ff4c_1
  - nss=3.77=h2350873_0
  - numba=0.55.1=py38h4bf6c61_0
  - numcodecs=0.9.1=py38h709712a_2
  - numpy=1.21.6=py38h1d589f8_0
  - oauthlib=3.2.0=pyhd8ed1ab_0
  - openblas=0.3.20=pthreads_h320a7e8_0
  - openjpeg=2.4.0=hb52868f_1
  - openssl=1.1.1n=h166bdaf_0
  - ostrich=21.03.16=h4bd325d_1
  - outcome=1.1.0=pyhd8ed1ab_0
  - owslib=0.25.0=pyhd8ed1ab_0
  - packaging=21.3=pyhd8ed1ab_0
  - pamela=1.0.0=py_0
  - pandas=1.3.5=py38h43a58ef_0
  - pandoc=2.18=ha770c72_0
  - pandocfilters=1.5.0=pyhd8ed1ab_0
  - panel=0.13.1a2=py_0
  - param=1.12.1=pyh6c4a22f_0
  - paramiko=2.10.4=pyhd8ed1ab_0
  - parso=0.8.3=pyhd8ed1ab_0
  - partd=1.2.0=pyhd8ed1ab_0
  - patsy=0.5.2=pyhd8ed1ab_0
  - pcre=8.45=h9c3ff4c_0
  - pexpect=4.8.0=py38h32f6830_1
  - pickleshare=0.7.5=py38h32f6830_1002
  - pillow=9.1.0=py38h0ee0e06_2
  - pint=0.19.2=pyhd8ed1ab_0
  - pip=22.0.4=pyhd8ed1ab_0
  - pixman=0.40.0=h36c2ea0_0
  - platformdirs=2.5.1=pyhd8ed1ab_0
  - plotly=5.7.0=pyhd8ed1ab_0
  - pluggy=1.0.0=py38h578d9bd_3
  - pooch=1.6.0=pyhd8ed1ab_0
  - poppler=21.09.0=ha39eefc_3
  - poppler-data=0.4.11=hd8ed1ab_0
  - postgresql=13.5=h2510834_1
  - pre-commit=2.18.1=py38h578d9bd_1
  - proj=8.1.1=h277dcde_2
  - prometheus_client=0.14.1=pyhd8ed1ab_0
  - prompt-toolkit=3.0.29=pyha770c72_0
  - prompt_toolkit=3.0.29=hd8ed1ab_0
  - properscoring=0.1=py_0
  - protobuf=3.20.0=py38hfa26641_4
  - pscript=0.7.5=pyhd3deb0d_0
  - psutil=5.9.0=py38h0a891b7_1
  - pthread-stubs=0.4=h36c2ea0_1001
  - ptyprocess=0.7.0=pyhd3deb0d_0
  - pure_eval=0.2.2=pyhd8ed1ab_0
  - py=1.11.0=pyh6c4a22f_0
  - pyasn1=0.4.8=py_0
  - pyasn1-modules=0.2.7=py_0
  - pycparser=2.21=pyhd8ed1ab_0
  - pyct=0.4.6=py_0
  - pyct-core=0.4.6=py_0
  - pycurl=7.45.1=py38h61f0cdf_1
  - pydantic=1.9.0=py38h0a891b7_1
  - pydap=3.3.0=pyhd8ed1ab_0
  - pygeos=0.10.2=py38hb7fe4a8_0
  - pygments=2.12.0=pyhd8ed1ab_0
  - pyjwt=2.3.0=pyhd8ed1ab_1
  - pynacl=1.5.0=py38h0a891b7_1
  - pyopenssl=22.0.0=pyhd8ed1ab_0
  - pyparsing=3.0.8=pyhd8ed1ab_0
  - pyproj=3.2.1=py38h80797bf_2
  - pyqt=5.12.3=py38h578d9bd_8
  - pyqt-impl=5.12.3=py38h0ffb2e6_8
  - pyqt5-sip=4.19.18=py38h709712a_8
  - pyqtchart=5.12=py38h7400c14_8
  - pyqtwebengine=5.12.1=py38h7400c14_8
  - pyrsistent=0.18.1=py38h0a891b7_1
  - pyshp=2.3.0=pyhd8ed1ab_0
  - pysocks=1.7.1=py38h578d9bd_5
  - pytest=7.1.2=py38h578d9bd_0
  - python=3.8.13=h582c2e5_0_cpython
  - python-dateutil=2.8.2=pyhd8ed1ab_0
  - python-eccodes=1.4.0=py38h71d37f0_1
  - python-fastjsonschema=2.15.3=pyhd8ed1ab_0
  - python-json-logger=2.0.1=pyh9f0ad1d_0
  - python_abi=3.8=2_cp38
  - pytz=2022.1=pyhd8ed1ab_0
  - pyu2f=0.1.5=pyhd8ed1ab_0
  - pyviz_comms=2.2.0=pyhd8ed1ab_0
  - pywavelets=1.3.0=py38h71d37f0_1
  - pyyaml=6.0=py38h0a891b7_4
  - pyzmq=22.3.0=py38hfc09fa9_2
  - qt=5.12.9=hda022c4_4
  - qtconsole=5.3.0=pyhd8ed1ab_0
  - qtconsole-base=5.3.0=pyhd8ed1ab_0
  - qtpy=2.1.0=pyhd8ed1ab_0
  - rasterio=1.2.10=py38hfd64e68_0
  - raven-hydro=3.0.4.322=ha46ed4c_2
  - ravenpy=0.7.8=pyh8a188c0_0
  - readline=8.1=h46c0cb4_0
  - regionmask=0.9.0=pyhd8ed1ab_0
  - requests=2.27.1=pyhd8ed1ab_0
  - requests-oauthlib=1.3.1=pyhd8ed1ab_0
  - retrying=1.3.3=py_2
  - rioxarray=0.11.1=pyhd8ed1ab_0
  - roocs-utils=0.6.1=pyh6c4a22f_0
  - rsa=4.8=pyhd8ed1ab_0
  - rtree=1.0.0=py38h02d302b_1
  - ruamel.yaml=0.17.21=py38h0a891b7_1
  - ruamel.yaml.clib=0.2.6=py38h0a891b7_1
  - s3fs=2022.3.0=pyhd8ed1ab_0
  - scikit-image=0.19.2=py38h43a58ef_0
  - scikit-learn=1.0.2=py38h1561384_0
  - scipy=1.8.0=py38h56a6a73_1
  - scp=0.14.4=pyhd8ed1ab_0
  - selenium=4.1.0=pyhd8ed1ab_0
  - send2trash=1.8.0=pyhd8ed1ab_0
  - setuptools=59.8.0=py38h578d9bd_1
  - shapely=1.7.1=py38hb7fe4a8_5
  - simpervisor=0.4=pyhd8ed1ab_0
  - siphon=0.9=py38h578d9bd_1
  - six=1.16.0=pyh6c4a22f_0
  - smmap=3.0.5=pyh44b312d_0
  - snappy=1.1.8=he1b5a44_3
  - sniffio=1.2.0=py38h578d9bd_3
  - snuggs=1.4.7=py_0
  - sortedcontainers=2.4.0=pyhd8ed1ab_0
  - soupsieve=2.3.1=pyhd8ed1ab_0
  - sparse=0.13.0=pyhd8ed1ab_0
  - sqlalchemy=1.4.36=py38h0a891b7_0
  - sqlite=3.38.3=h4ff8645_0
  - stack_data=0.2.0=pyhd8ed1ab_0
  - statsmodels=0.13.2=py38h6c62de6_0
  - tblib=1.7.0=pyhd8ed1ab_0
  - tenacity=8.0.1=pyhd8ed1ab_0
  - terminado=0.13.3=py38h578d9bd_1
  - threadpoolctl=3.1.0=pyh8a188c0_0
  - threddsclient=0.4.2=py_0
  - tifffile=2020.6.3=py_0
  - tiledb=2.3.4=he87e0bf_0
  - tinycss2=1.1.1=pyhd8ed1ab_0
  - tk=8.6.12=h27826a3_0
  - toml=0.10.2=pyhd8ed1ab_0
  - tomli=2.0.1=pyhd8ed1ab_0
  - toolz=0.11.2=pyhd8ed1ab_0
  - tornado=6.1=py38h0a891b7_3
  - tqdm=4.64.0=pyhd8ed1ab_0
  - traitlets=5.1.1=pyhd8ed1ab_0
  - traittypes=0.2.1=pyh9f0ad1d_2
  - trio=0.20.0=py38h578d9bd_1
  - trio-websocket=0.9.2=pyhd8ed1ab_0
  - typing-extensions=4.2.0=hd8ed1ab_1
  - typing_extensions=4.2.0=pyha770c72_1
  - tzcode=2022a=h166bdaf_0
  - tzdata=2022a=h191b570_0
  - ukkonen=1.0.1=py38h43d8883_2
  - unicodedata2=14.0.0=py38h0a891b7_1
  - urllib3=1.26.9=pyhd8ed1ab_0
  - virtualenv=20.14.1=py38h578d9bd_0
  - voila=0.3.5=pyhd8ed1ab_0
  - wcwidth=0.2.5=pyh9f0ad1d_2
  - webencodings=0.5.1=py_1
  - webob=1.8.7=pyhd8ed1ab_0
  - websocket-client=1.3.2=pyhd8ed1ab_0
  - websockets=10.3=py38h0a891b7_0
  - werkzeug=2.1.2=pyhd8ed1ab_0
  - wget=1.20.3=ha56f1ee_1
  - wheel=0.37.1=pyhd8ed1ab_0
  - widgetsnbextension=3.6.0=py38h578d9bd_0
  - wrapt=1.14.1=py38h0a891b7_0
  - wsproto=1.1.0=py38h578d9bd_0
  - xarray=2022.3.0=pyhd8ed1ab_0
  - xclim=0.36.0=pyhd8ed1ab_0
  - xerces-c=3.2.3=h9d8b166_3
  - xesmf=0.6.2=pyhd8ed1ab_0
  - xeus=2.4.1=h70bab47_0
  - xeus-python=0.13.7=py38h9f61dbb_0
  - xeus-python-shell=0.2.0=pyhd8ed1ab_0
  - xhistogram=0.3.1=pyhd8ed1ab_0
  - xlrd=2.0.1=pyhd8ed1ab_3
  - xorg-damageproto=1.2.1=h7f98852_1002
  - xorg-fixesproto=5.0=h7f98852_1002
  - xorg-glproto=1.4.17=h7f98852_1002
  - xorg-inputproto=2.3.2=h7f98852_1002
  - xorg-kbproto=1.0.7=h7f98852_1002
  - xorg-libice=1.0.10=h7f98852_0
  - xorg-libsm=1.2.3=hd9c2040_1000
  - xorg-libx11=1.7.2=h7f98852_0
  - xorg-libxau=1.0.9=h7f98852_0
  - xorg-libxdamage=1.1.5=h7f98852_1
  - xorg-libxdmcp=1.1.3=h7f98852_0
  - xorg-libxext=1.3.4=h7f98852_1
  - xorg-libxfixes=5.0.3=h7f98852_1004
  - xorg-libxi=1.7.10=h7f98852_0
  - xorg-libxrandr=1.5.2=h7f98852_1
  - xorg-libxrender=0.9.10=h7f98852_1003
  - xorg-randrproto=1.5.0=h7f98852_1001
  - xorg-renderproto=0.11.1=h7f98852_1002
  - xorg-util-macros=1.19.3=h7f98852_0
  - xorg-xextproto=7.3.0=h7f98852_1002
  - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002
  - xorg-xproto=7.0.31=h7f98852_1007
  - xrft=0.4.1=pyhd8ed1ab_0
  - xskillscore=0.0.24=pyhd8ed1ab_0
  - xyzservices=2022.4.0=pyhd8ed1ab_0
  - xz=5.2.5=h516909a_1
  - yaml=0.2.5=h7f98852_2
  - yarl=1.7.2=py38h0a891b7_2
  - zarr=2.11.3=pyhd8ed1ab_0
  - zeromq=4.3.4=h9c3ff4c_1
  - zict=2.2.0=pyhd8ed1ab_0
  - zipp=3.8.0=pyhd8ed1ab_0
  - zlib=1.2.11=h166bdaf_1014
  - zstd=1.5.2=ha95c52a_0
  - pip:
    - astunparse==1.6.3
    - colour==0.1.5
    - geojson==2.5.0
    - ipython-blocking==0.3.1
    - jupyterlab-logout==0.5.0
    - jupyternotify==0.1.15
    - pixiedust==1.1.19
    - pymetalink==6.4
    - pytest-tornasync==0.6.0.post2
    - requests-magpie==0.1.1
prefix: /opt/conda/envs/birdy
```
@github-actions github-actions bot added ci/operations Continuous Integration components documentation Improvements or additions to documentation labels May 5, 2022
@tlvu tlvu merged commit ecce753 into master May 5, 2022
@tlvu tlvu deleted the new-jupyter-env branch May 5, 2022 23:58
@crim-jenkins-bot
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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/876/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : new-jupyter-env
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS
    
</code>

@tlvu
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tlvu commented May 6, 2022

@tlogan2000 This is live on prod, you can send email announcement to our Jupyter users.

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