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SPARCED new organization #33

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SPARCED new organization #33

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Commits on Mar 13, 2024

  1. Radicaal quick restructuration

    @ChocolateCharlie
    ChocolateCharlie committed Mar 13, 2024
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  2. More quick organization

    @ChocolateCharlie
    ChocolateCharlie committed Mar 13, 2024
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  3. Quick clean of input and data structure

    @ChocolateCharlie
    ChocolateCharlie committed Mar 13, 2024
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  4. Remove Nextflow files from a specific user

    @ChocolateCharlie
    ChocolateCharlie committed Mar 13, 2024
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Commits on Mar 18, 2024

  1. Add common accessory Python files to .gitignore

    @ChocolateCharlie
    ChocolateCharlie committed Mar 18, 2024
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  2. Group files related to nextfow and kube in separate folder

    @ChocolateCharlie
    ChocolateCharlie committed Mar 18, 2024
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  3. Erase unecessary file

    @ChocolateCharlie
    ChocolateCharlie committed Mar 18, 2024
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  4. Update version file

    @ChocolateCharlie
    ChocolateCharlie committed Mar 18, 2024
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  5. Refactor Antimony model creation

    @ChocolateCharlie
    ChocolateCharlie committed Mar 18, 2024
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Commits on Mar 19, 2024

  1. Fix Antimony model creation in create_model script

    @ChocolateCharlie
    ChocolateCharlie committed Mar 19, 2024
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  2. Move temporarily previous documentation and create Sphinx docs

    @ChocolateCharlie
    ChocolateCharlie committed Mar 19, 2024
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  3. Generate basic documentation with PDJ theme

    @ChocolateCharlie
    ChocolateCharlie committed Mar 19, 2024
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  4. Move requirements to correct folder

    @ChocolateCharlie
    ChocolateCharlie committed Mar 19, 2024
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  5. Remove unnecessary config file

    @ChocolateCharlie
    ChocolateCharlie committed Mar 19, 2024
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Commits on Mar 21, 2024

  1. Autogenerate documentation with Sphinx

    @ChocolateCharlie
    ChocolateCharlie committed Mar 21, 2024
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  2. Create documentation page for model creation

    @ChocolateCharlie
    ChocolateCharlie committed Mar 21, 2024
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  3. Improve documentation for model creation

    @ChocolateCharlie
    ChocolateCharlie committed Mar 21, 2024
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  4. Add some documentation for antimony_utils

    @ChocolateCharlie
    ChocolateCharlie committed Mar 21, 2024
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Commits on Mar 22, 2024

  1. Separate SBML utils from rest of model creation script

    @ChocolateCharlie
    ChocolateCharlie committed Mar 22, 2024
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Commits on Apr 3, 2024

  1. First version to fully create a SPARCED model, from Antimony to AMICI

    @ChocolateCharlie
    ChocolateCharlie committed Apr 3, 2024
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  2. Clean input data files organization

    @ChocolateCharlie
    ChocolateCharlie committed Apr 3, 2024
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  3. Make arguments handling function reusable ; refactor utilities organi… 

    …zation
    @ChocolateCharlie
    ChocolateCharlie committed Apr 3, 2024
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  4. Keep cleaning model creation script

    @ChocolateCharlie
    ChocolateCharlie committed Apr 3, 2024
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Commits on Apr 4, 2024

  1. Update documentation

    @ChocolateCharlie
    ChocolateCharlie committed Apr 4, 2024
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  2. Fix docs error in create_model ; attempt to fix layout for arguments

    @ChocolateCharlie
    ChocolateCharlie committed Apr 4, 2024
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  3. Clean command line antimony creation workflow

    @ChocolateCharlie
    ChocolateCharlie committed Apr 4, 2024
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  4. Ensure correctness of the generated Antimony file

    @ChocolateCharlie
    ChocolateCharlie committed Apr 4, 2024
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  5. Finish clean pipeline for Antimony model creation!

    @ChocolateCharlie
    ChocolateCharlie committed Apr 4, 2024
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  6. Remove unnecessary __init__.py files

    @ChocolateCharlie
    ChocolateCharlie committed Apr 4, 2024
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Commits on Apr 5, 2024

  1. Clean SBML model creation

    @ChocolateCharlie
    ChocolateCharlie committed Apr 5, 2024
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  2. Some work towards getting a similar SBML file than legacy - very clos… 

    …e but not there yet
    @ChocolateCharlie
    ChocolateCharlie committed Apr 5, 2024
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Commits on Apr 8, 2024

  1. Fix conflict between ant_ and sbml_ prefixes

    @ChocolateCharlie
    ChocolateCharlie committed Apr 8, 2024
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  2. Create the wild flag to handle hard-coded values

    @ChocolateCharlie
    ChocolateCharlie committed Apr 8, 2024
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  3. Quick update of autodocumentation and fixing of all the bugs raised

    @ChocolateCharlie
    ChocolateCharlie committed Apr 8, 2024
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Commits on Apr 9, 2024

  1. Minor rearrangement of markdown files

    @ChocolateCharlie
    ChocolateCharlie committed Apr 9, 2024
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  2. Update documentation

    @ChocolateCharlie
    ChocolateCharlie committed Apr 9, 2024
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Commits on Apr 11, 2024

  1. Add some functions to handle AMICI compilation

    @ChocolateCharlie
    ChocolateCharlie committed Apr 11, 2024
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  2. Remove duplicate model name and add observables argument

    @ChocolateCharlie
    ChocolateCharlie committed Apr 11, 2024
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  3. Ongoing work with SBML

    @ChocolateCharlie
    ChocolateCharlie committed Apr 11, 2024
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  4. Ongoing work with AMICI compilation results

    @ChocolateCharlie
    ChocolateCharlie committed Apr 11, 2024
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  5. Create simulation folder

    @ChocolateCharlie
    ChocolateCharlie committed Apr 11, 2024
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  6. Fix SBML ; generate clean SBML model

    @ChocolateCharlie
    ChocolateCharlie committed Apr 11, 2024
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  7. Restore verbose default value

    @ChocolateCharlie
    ChocolateCharlie committed Apr 11, 2024
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Commits on Apr 12, 2024

  1. Update documentation

    @ChocolateCharlie
    ChocolateCharlie committed Apr 12, 2024
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  2. Remove SPARCED_Brep

    @ChocolateCharlie
    ChocolateCharlie committed Apr 12, 2024
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  3. Remove temporary documentation

    @ChocolateCharlie
    ChocolateCharlie committed Apr 12, 2024
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  4. Update documentation

    @ChocolateCharlie
    ChocolateCharlie committed Apr 12, 2024
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  5. Remove unnecessary file

    @ChocolateCharlie
    ChocolateCharlie committed Apr 12, 2024
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  6. Update SBML file

    @ChocolateCharlie
    ChocolateCharlie committed Apr 12, 2024
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  7. Make awesome docs

    @ChocolateCharlie
    ChocolateCharlie committed Apr 12, 2024
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  8. Add section for results replication in docs

    @ChocolateCharlie
    ChocolateCharlie committed Apr 12, 2024
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Commits on Apr 15, 2024

  1. Clear examples into subfolders

    @ChocolateCharlie
    ChocolateCharlie committed Apr 15, 2024
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  2. Add installation guide to docs

    @ChocolateCharlie
    ChocolateCharlie committed Apr 15, 2024
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  3. Update version number

    @ChocolateCharlie
    ChocolateCharlie committed Apr 15, 2024
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Commits on Apr 16, 2024

  1. Add license to docs

    @ChocolateCharlie
    ChocolateCharlie committed Apr 16, 2024
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  2. Update amici compilation file name

    @ChocolateCharlie
    ChocolateCharlie committed Apr 16, 2024
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  3. Add amici SPARCED standard model

    @ChocolateCharlie
    ChocolateCharlie committed Apr 16, 2024
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  4. Update requirements file and add an environment file

    @ChocolateCharlie
    ChocolateCharlie committed Apr 16, 2024
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  5. Add docs requirements

    @ChocolateCharlie
    ChocolateCharlie committed Apr 16, 2024
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  6. Add amici version number to installation guide

    @ChocolateCharlie
    ChocolateCharlie committed Apr 16, 2024
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Commits on Apr 17, 2024

  1. Clean Antimony file creation

    @ChocolateCharlie
    ChocolateCharlie committed Apr 17, 2024
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  2. Update documentation for Antimony

    @ChocolateCharlie
    ChocolateCharlie committed Apr 17, 2024
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  3. Update documentation for SBML

    @ChocolateCharlie
    ChocolateCharlie committed Apr 17, 2024
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  4. Update documentation for AMICI

    @ChocolateCharlie
    ChocolateCharlie committed Apr 17, 2024
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  5. Add SPARCED legacy model

    @ChocolateCharlie
    ChocolateCharlie committed Apr 17, 2024
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  6. Compare SPARCED standard with SPARCED legacy

    @ChocolateCharlie
    ChocolateCharlie committed Apr 17, 2024
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Commits on Apr 18, 2024

  1. Add requirements to run notebooks

    @ChocolateCharlie
    ChocolateCharlie committed Apr 18, 2024
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  2. Add SPARCED notebook model

    @ChocolateCharlie
    ChocolateCharlie committed Apr 18, 2024
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  3. AMICI models differences between legacy, notebook and standard versions

    @ChocolateCharlie
    ChocolateCharlie committed Apr 18, 2024
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  4. Update comparison between legacy and notebook models

    @ChocolateCharlie
    ChocolateCharlie committed Apr 18, 2024
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  5. Remove old unused files

    @ChocolateCharlie
    ChocolateCharlie committed Apr 18, 2024
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  6. Move Excel to TSV file conversion function to data folder

    @ChocolateCharlie
    ChocolateCharlie committed Apr 18, 2024
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  7. Add simulation arguments ; move file to main folder for better access

    @ChocolateCharlie
    ChocolateCharlie committed Apr 18, 2024
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  8. Move usefull data loading function to general utils

    @ChocolateCharlie
    ChocolateCharlie committed Apr 18, 2024
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Commits on Apr 19, 2024

  1. Fix typo in create_model imports

    @ChocolateCharlie
    ChocolateCharlie committed Apr 19, 2024
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  2. Update documentation

    @ChocolateCharlie
    ChocolateCharlie committed Apr 19, 2024
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  3. Remove unuseful and empty __init__ file

    @ChocolateCharlie
    ChocolateCharlie committed Apr 19, 2024
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  4. Make utils a module by adding an empty __init__ file

    @ChocolateCharlie
    ChocolateCharlie committed Apr 19, 2024
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  5. Add details to arguments helper

    @ChocolateCharlie
    ChocolateCharlie committed Apr 19, 2024
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  6. Add some ligands concentration handling for simulations

    @ChocolateCharlie
    ChocolateCharlie committed Apr 19, 2024
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  7. [BROKEN] Start cleaning run model simulation functions

    @ChocolateCharlie
    ChocolateCharlie committed Apr 19, 2024
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Commits on Apr 23, 2024

  1. Remove old and ambiguous AMICI model

    @ChocolateCharlie
    ChocolateCharlie committed Apr 23, 2024
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  2. Merge pull request #2 from birtwistlelab/master 

    Update content of Demo file to match Jupyter Notebook output
    @ChocolateCharlie
    ChocolateCharlie committed Apr 23, 2024
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  3. Add missing verbose argument

    @ChocolateCharlie
    ChocolateCharlie committed Apr 23, 2024
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  4. The run script worksgit add simulation/run.py !

    @ChocolateCharlie
    ChocolateCharlie committed Apr 23, 2024
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  5. Latest file version

    @ChocolateCharlie
    ChocolateCharlie committed Apr 23, 2024
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  6. Dirty hard-coding to test quickly the simulation pipeline

    @ChocolateCharlie
    ChocolateCharlie committed Apr 23, 2024
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  7. Do no track simulation results

    @ChocolateCharlie
    ChocolateCharlie committed Apr 23, 2024
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Commits on Apr 24, 2024

  1. Remove old file that seemed unnecessary

    @ChocolateCharlie
    ChocolateCharlie committed Apr 24, 2024
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  2. Organize run model into several files

    @ChocolateCharlie
    ChocolateCharlie committed Apr 24, 2024
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  3. Read ligands from arguments

    @ChocolateCharlie
    ChocolateCharlie committed Apr 24, 2024
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Commits on Apr 25, 2024

  1. Set deterministic mode as default

    @ChocolateCharlie
    ChocolateCharlie committed Apr 25, 2024
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  2. Rename notebook files to ease simulation

    @ChocolateCharlie
    ChocolateCharlie committed Apr 25, 2024
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Commits on Apr 26, 2024

  1. Remove docker and kubernetes examples

    @ChocolateCharlie
    ChocolateCharlie committed Apr 26, 2024
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  2. Reorganize clean source

    @ChocolateCharlie
    ChocolateCharlie committed Apr 26, 2024
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  3. Update SPARCED's sbml model

    @ChocolateCharlie
    ChocolateCharlie committed Apr 26, 2024
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  4. Update documentation

    @ChocolateCharlie
    ChocolateCharlie committed Apr 26, 2024
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  5. Update README file

    @ChocolateCharlie
    ChocolateCharlie committed Apr 26, 2024
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  6. Attempt to fix internal links in README.md

    @ChocolateCharlie
    ChocolateCharlie committed Apr 26, 2024
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  7. Change link for papers reference in README.md

    @ChocolateCharlie
    ChocolateCharlie committed Apr 26, 2024
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  8. Move utility function from data folder to src folder

    @ChocolateCharlie
    ChocolateCharlie committed Apr 26, 2024
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  9. Update documentation

    @ChocolateCharlie
    ChocolateCharlie committed Apr 26, 2024
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  10. Remove Demo and Jupyter Notebook folders

    @ChocolateCharlie
    ChocolateCharlie committed Apr 26, 2024
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  11. Merge clean organization

    @ChocolateCharlie
    ChocolateCharlie committed Apr 26, 2024
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  12. Remove Docker file

    @ChocolateCharlie
    ChocolateCharlie committed Apr 26, 2024
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  13. Create Jupyter Notebook tutorial

    @ChocolateCharlie
    ChocolateCharlie committed Apr 26, 2024
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  14. Create Jupyter Notebook tutorial

    @ChocolateCharlie
    ChocolateCharlie committed Apr 26, 2024
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  15. Move output parameters to model folder instead of input data

    @ChocolateCharlie
    ChocolateCharlie committed Apr 26, 2024
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  16. Fix broken links in README.md

    @ChocolateCharlie
    ChocolateCharlie committed Apr 26, 2024
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  17. Improve docs index

    @ChocolateCharlie
    ChocolateCharlie committed Apr 26, 2024
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Commits on Apr 29, 2024

  1. Create arguments for GeneReg and OmicsData file paths

    @ChocolateCharlie
    ChocolateCharlie committed Apr 29, 2024
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  2. Fix tutorial

    @ChocolateCharlie
    ChocolateCharlie committed Apr 29, 2024
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  3. Add python-libsbml version number to installation guide

    @ChocolateCharlie
    ChocolateCharlie committed Apr 29, 2024
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  4. Add argument for simulation output directory

    @ChocolateCharlie
    ChocolateCharlie committed Apr 29, 2024
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  5. Add a todo

    @ChocolateCharlie
    ChocolateCharlie committed Apr 29, 2024
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Commits on May 1, 2024

  1. Update arguments help

    @ChocolateCharlie
    ChocolateCharlie committed May 1, 2024
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  2. Create IFNg model extension

    @ChocolateCharlie
    ChocolateCharlie committed May 1, 2024
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  3. Remove SPARCED legacy model to avoid confusion

    @ChocolateCharlie
    ChocolateCharlie committed May 1, 2024
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Commits on May 2, 2024

  1. Add a bunch of useful general functions

    @ChocolateCharlie
    ChocolateCharlie committed May 2, 2024
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Commits on May 3, 2024

  1. Revert data files from IFNg to standard

    @ChocolateCharlie
    ChocolateCharlie committed May 3, 2024
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Commits on May 6, 2024

  1. Fix coefficients in StoicMat 

    Exchange vTE13 and vTE14 coefficients as those reactions where swapped in the Ratelaws.
    @ChocolateCharlie
    ChocolateCharlie committed May 6, 2024
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Commits on May 8, 2024

  1. Make input files model specific

    @ChocolateCharlie
    ChocolateCharlie committed May 8, 2024
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  2. Update .gitignore

    @ChocolateCharlie
    ChocolateCharlie committed May 8, 2024
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  3. Update .gitignore

    @ChocolateCharlie
    ChocolateCharlie committed May 8, 2024
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  4. Update .gitignore to let README of default results folder appear

    @ChocolateCharlie
    ChocolateCharlie committed May 8, 2024
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  5. Change population argument name to popsize

    @ChocolateCharlie
    ChocolateCharlie committed May 8, 2024
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  6. Replace population by popsize everywhere

    @ChocolateCharlie
    ChocolateCharlie committed May 8, 2024
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  7. Update data README

    @ChocolateCharlie
    ChocolateCharlie committed May 8, 2024
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Commits on May 9, 2024

  1. Update environment.yml

    @ChocolateCharlie
    ChocolateCharlie committed May 9, 2024
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  2. Restore original StoicMat file

    @ChocolateCharlie
    ChocolateCharlie committed May 9, 2024
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  3. Create SPARCED-legacy model

    @ChocolateCharlie
    ChocolateCharlie committed May 9, 2024
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  4. Remove data folder

    @ChocolateCharlie
    ChocolateCharlie committed May 9, 2024
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  5. Use Antimony compatible name for SPARCED standard

    @ChocolateCharlie
    ChocolateCharlie committed May 9, 2024
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  6. Update config file name

    @ChocolateCharlie
    ChocolateCharlie committed May 9, 2024
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  7. Remove SPARCED tutorial model

    @ChocolateCharlie
    ChocolateCharlie committed May 9, 2024
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  8. Create blank tutorial model folder

    @ChocolateCharlie
    ChocolateCharlie committed May 9, 2024
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  9. Remove unnecessary arguments

    @ChocolateCharlie
    ChocolateCharlie committed May 9, 2024
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  10. Update default perturbation name in config files

    @ChocolateCharlie
    ChocolateCharlie committed May 9, 2024
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Commits on May 10, 2024

  1. benchmarks directory added

    jonahrileyhuggins committed May 10, 2024
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  2. benchmarks directory added

    jonahrileyhuggins committed May 10, 2024
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  3. benchmarks directory added

    jonahrileyhuggins committed May 10, 2024
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  4. Update arguments

    @ChocolateCharlie
    ChocolateCharlie committed May 10, 2024
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  5. Clarify yaml structure

    @ChocolateCharlie
    ChocolateCharlie committed May 10, 2024
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  6. Update version number

    @ChocolateCharlie
    ChocolateCharlie committed May 10, 2024
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  7. Clarifiy arguments for compilation

    @ChocolateCharlie
    ChocolateCharlie committed May 10, 2024
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  8. Add PyYAML to requirements

    @ChocolateCharlie
    ChocolateCharlie committed May 10, 2024
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  9. Update arguments

    @ChocolateCharlie
    ChocolateCharlie committed May 10, 2024
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  10. Add paths handling utility file

    @ChocolateCharlie
    ChocolateCharlie committed May 10, 2024
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  11. Update type hint of append_subfolder()

    @ChocolateCharlie
    ChocolateCharlie committed May 10, 2024
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  12. Fix typo in arguments

    @ChocolateCharlie
    ChocolateCharlie committed May 10, 2024
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  13. Create launcher file for model compilation

    @ChocolateCharlie
    ChocolateCharlie committed May 10, 2024
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  14. Update main script to use compilation launcher

    @ChocolateCharlie
    ChocolateCharlie committed May 10, 2024
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  15. Update append_subfolder() error handling

    @ChocolateCharlie
    ChocolateCharlie committed May 10, 2024
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  16. Update error handling in paths

    @ChocolateCharlie
    ChocolateCharlie committed May 10, 2024
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  17. Recompile SPARCED standard

    @ChocolateCharlie
    ChocolateCharlie committed May 10, 2024
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  18. Update create_model() to fit new arguments

    @ChocolateCharlie
    ChocolateCharlie committed May 10, 2024
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Commits on May 13, 2024

  1. Move functions into utils and restructure a bit

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  2. Fix typo

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  3. Update to integrate new functions

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  4. Enhance arguments readability

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  5. Tidy compilation launcher

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  6. Update module name

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  7. Update variable name

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  8. Update simulation scripts

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  9. Re-write loading of initial conditions

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  10. Add function to ensure validity of popsize

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  11. Remove compound and dose

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  12. Implement perturbations

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  13. Update main script

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  14. Fix Path's import

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  15. Fix arguments mismatch

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  16. Fix typo

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  17. Fix another typo

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  18. Fix input files loading

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  19. Update SPARCED_standard sbml

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  20. [BROKEN] Fix some issues in simulation launcher

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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  21. Update documentation

    @ChocolateCharlie
    ChocolateCharlie committed May 13, 2024
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Commits on May 14, 2024

  1. Fix SPARCED_standard's config file

    @ChocolateCharlie
    ChocolateCharlie committed May 14, 2024
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  2. [FIXED] Working simulation pipeline

    @ChocolateCharlie
    ChocolateCharlie committed May 14, 2024
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  3. Update documentation

    @ChocolateCharlie
    ChocolateCharlie committed May 14, 2024
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Commits on May 15, 2024

  1. Fix bug in population check

    @ChocolateCharlie
    ChocolateCharlie committed May 15, 2024
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Commits on May 17, 2024

  1. Downgrade swig version

    ChocolateCharlie committed May 17, 2024
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  2. Minor SBML changes

    ChocolateCharlie committed May 17, 2024
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Commits on May 20, 2024

  1. Add basic plotting script

    @ChocolateCharlie
    ChocolateCharlie committed May 20, 2024
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  2. Merge remote-tracking branch 'refs/remotes/origin/master'

    @ChocolateCharlie
    ChocolateCharlie committed May 20, 2024
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Commits on May 22, 2024

  1. Clean SPARCED_legacy 

    Recompile SPARCED_legacy with the original Jupyter Notebook under the name SPARCED_legacy (ensures compatibility with version 2.0.0)
Run a default simulation of SPARCED_legacy on the original Jupyter Notebook with perturbations as specified in the default.txt file
    @ChocolateCharlie
    ChocolateCharlie committed May 22, 2024
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  2. Add time for SPARCED_legacy control simulation 

    Run SPARCED_legacy model using the 2.0.0 pipeline under the same conditions as with the 1.3.0 control
Results showed no difference at all between both, but the 1.3.0 version doesn't save time by default, which is useful for plotting.
    @ChocolateCharlie
    ChocolateCharlie committed May 22, 2024
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  3. Clean SPARCED_standard 

    Recompile SPARCED_standard with the original legacy SPARCED input data files (v1.3.0) using the 2.0.0 pipeline
Run a default simulation of SPARCED_standard using the 2.0.0 pipeline with perturbations as specified in the default.txt file
Those control results are strictly identical to those for SPARCED_legacy
    @ChocolateCharlie
    ChocolateCharlie committed May 22, 2024
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  4. Add README to control simulation of SPARCED_legacy

    @ChocolateCharlie
    ChocolateCharlie committed May 22, 2024
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  5. Remove old IFNg model

    @ChocolateCharlie
    ChocolateCharlie committed May 22, 2024
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  6. Update & run SPARCED's interactive tutorial

    @ChocolateCharlie
    ChocolateCharlie committed May 22, 2024
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Commits on May 23, 2024

  1. Apply perturbations separately from loading initial conditions

    @ChocolateCharlie
    ChocolateCharlie committed May 23, 2024
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  2. Add possibility to simulate incubation

    @ChocolateCharlie
    ChocolateCharlie committed May 23, 2024
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  3. Add full incubation pipeline 

    This pipeline was tested on the SPARCED_standard model for a) no incubation specified at all b) an incubation defined to 0 hours and c) an incubation set to 24 hours.
    @ChocolateCharlie
    ChocolateCharlie committed May 23, 2024
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  4. Merge incubation pipeline into main

    @ChocolateCharlie
    ChocolateCharlie committed May 23, 2024
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  5. Update SPARCED's interactive tutorial

    @ChocolateCharlie
    ChocolateCharlie committed May 23, 2024
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