[bitnami/kibana] importing ndjson as configmap

[ghost]

Which chart:
kibana: 7.2.5

Describe the bug
Kibana crashes when importing kibana exported ndjson file as configmap

To Reproduce
Steps to reproduce the behavior:

1. Deploy the chart using helm install with your local values.yaml

kibana:
  elasticsearch:
    hosts:
      - "{{ .Release.Name }}-elasticsearch-coordinating-only"

2. Once the chart deploys open Kibana and create an index pattern (Stack Management -> Index patterns)
3. Click Saved Objects, export the index pattern as index.ndjson
4. kubectl create configmap kibana --from-file index.ndjson
5. kubectl get configmap kibana -o yaml > kibana.yaml
6. Delete all the metadata fields except name: kibana.
7. Move the file to templates/kibana.yaml
8. helm uninstall the chart (also delete the kibana configmap)
9. Edit helm chart values.yaml to include config map in kibana deployment:

kibana:
  elasticsearch:
    hosts:
      - "{{ .Release.Name }}-elasticsearch-coordinating-only"
    port: 9200
  savedObjects:
    configmap: kibana

10. Deploy the chart again using helm install
11. Note that kibana has picked up the config:

nami    INFO  Initializing kibana
kibana  INFO  ==> Found mounted kibana.yml configuration file
kibana  INFO
kibana  INFO  ########################################################################
kibana  INFO   Installation parameters for kibana:
kibana  INFO     Persisted data and properties have been restored.
kibana  INFO     Any input specified will not take effect.
kibana  INFO   This installation requires no credentials.
kibana  INFO  ########################################################################
kibana  INFO
nami    INFO  kibana successfully initialized

12. Note that kibana is stuck in "CrashLoopBackOff"

Expected behavior
Kibana successfully imports existing config and starts

Version of Helm and Kubernetes:

• Output of helm version:

version.BuildInfo{Version:"v3.3.4", GitCommit:"a61ce5633af99708171414353ed49547cf05013d", GitTreeState:"clean", GoVersion:"go1.14.9"}

• Output of kubectl version:

Client Version: version.Info{Major:"1", Minor:"19", GitVersion:"v1.19.1", GitCommit:"206bcadf021e76c27513500ca24182692aabd17e", GitTreeState:"clean", BuildDate:"2020-09-09T11:26:42Z", GoVersion:"go1.15", Compiler:"gc", Platform:"windows/amd64"}
Server Version: version.Info{Major:"1", Minor:"19", GitVersion:"v1.19.1", GitCommit:"206bcadf021e76c27513500ca24182692aabd17e", GitTreeState:"clean", BuildDate:"2020-09-14T07:30:52Z", GoVersion:"go1.15", Compiler:"gc", Platform:"linux/amd64"}

[javsalgar]

Hi,

Could you provide a minimal ndjson example that triggers the error? We would like to reproduce the issue in our side.

[ghost]

Unfortunately I'm not really sure what the "minimal" ndjson file is. The file that I get by going through the reproduce steps is pretty huge and it's just for the index. I'll try to regenerate later today.

[ghost]

My export.ndjson. Probably has a lot of fields due to my kubernetes filter @type kubernetes_metadata:

{"attributes":{"fields":"[{\"count\":0,\"name\":\"@timestamp\",\"type\":\"date\",\"esTypes\":[\"date\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true},{\"count\":0,\"name\":\"_id\",\"type\":\"string\",\"esTypes\":[\"_id\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":false},{\"count\":0,\"name\":\"_index\",\"type\":\"string\",\"esTypes\":[\"_index\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":false},{\"count\":0,\"name\":\"_score\",\"type\":\"number\",\"scripted\":false,\"searchable\":false,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"_source\",\"type\":\"_source\",\"esTypes\":[\"_source\"],\"scripted\":false,\"searchable\":false,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"_type\",\"type\":\"string\",\"esTypes\":[\"_type\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":false},{\"count\":0,\"name\":\"docker.container_id\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"docker.container_id.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"docker.container_id\"}}},{\"count\":0,\"name\":\"kubernetes.container_image\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.container_image.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"kubernetes.container_image\"}}},{\"count\":0,\"name\":\"kubernetes.container_image_id\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.container_image_id.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"kubernetes.container_image_id\"}}},{\"count\":0,\"name\":\"kubernetes.container_name\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.container_name.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"kubernetes.container_name\"}}},{\"count\":0,\"name\":\"kubernetes.host\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.host.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"kubernetes.host\"}}},{\"count\":0,\"name\":\"kubernetes.labels.alertmanager\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.labels.alertmanager.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"kubernetes.labels.alertmanager\"}}},{\"count\":0,\"name\":\"kubernetes.labels.app\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.labels.app.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"kubernetes.labels.app\"}}},{\"count\":0,\"name\":\"kubernetes.labels.app_kubernetes_io/component\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.labels.app_kubernetes_io/component.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"kubernetes.labels.app_kubernetes_io/component\"}}},{\"count\":0,\"name\":\"kubernetes.labels.app_kubernetes_io/instance\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.labels.app_kubernetes_io/instance.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"kubernetes.labels.app_kubernetes_io/instance\"}}},{\"count\":0,\"name\":\"kubernetes.labels.app_kubernetes_io/managed-by\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.labels.app_kubernetes_io/managed-by.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"kubernetes.labels.app_kubernetes_io/managed-by\"}}},{\"count\":0,\"name\":\"kubernetes.labels.app_kubernetes_io/name\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.labels.app_kubernetes_io/name.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"kubernetes.labels.app_kubernetes_io/name\"}}},{\"count\":0,\"name\":\"kubernetes.labels.controller-revision-hash\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.labels.controller-revision-hash.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"kubernetes.labels.controller-revision-hash\"}}},{\"count\":0,\"name\":\"kubernetes.labels.helm_sh/chart\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.labels.helm_sh/chart.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"kubernetes.labels.helm_sh/chart\"}}},{\"count\":0,\"name\":\"kubernetes.labels.install_operator_istio_io/owning-resource\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.labels.install_operator_istio_io/owning-resource.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"kubernetes.labels.install_operator_istio_io/owning-resource\"}}},{\"count\":0,\"name\":\"kubernetes.labels.istio\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.labels.istio.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"kubernetes.labels.istio\"}}},{\"count\":0,\"name\":\"kubernetes.labels.istio_io/rev\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.labels.istio_io/rev.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"kubernetes.labels.istio_io/rev\"}}},{\"count\":0,\"name\":\"kubernetes.labels.operator_istio_io/component\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.labels.operator_istio_io/component.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"kubernetes.labels.operator_istio_io/component\"}}},{\"count\":0,\"name\":\"kubernetes.labels.operator_prometheus_io/name\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.labels.operator_prometheus_io/name.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":{\"multi\":{\"parent\":\"kubernetes.labels.operator_prometheus_io/name\"}}},{\"count\":0,\"name\":\"kubernetes.labels.operator_prometheus_io/shard\",\"type\":\"string\",\"esTypes\":[\"text\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":false,\"readFromDocValues\":false},{\"count\":0,\"name\":\"kubernetes.labels.operator_prometheus_io/shard.keyword\",\"type\":\"string\",\"esTypes\":[\"keyword\"],\"scripted\":false,\"searchable\":true,\"aggregatable\":true,\"readFromDocValues\":true,\"subType\":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{"exportedCount":1,"missingRefCount":0,"missingReferences":[]}

[javsalgar]

Hi,

I was able to reproduce the issue and I think the problem is with our current status check logic. Note that we are close to perform a major change in the chart that includes a bash-based Kibana. I believe the issue should not be there once it is updated. This should happen soon.

[github-actions]

This Issue has been automatically marked as "stale" because it has not had recent activity (for 15 days). It will be closed if no further activity occurs. Thanks for the feedback.

[javsalgar]

Now we have a bash-based Kibana solution. Could you check if the issue is still there?

[github-actions]

This Issue has been automatically marked as "stale" because it has not had recent activity (for 15 days). It will be closed if no further activity occurs. Thanks for the feedback.

[ghost]

Sorry I haven't been able to get around to this. Is there new documentation for the new solution?

[javsalgar]

Hi,

You should be able to use the same parameters. Did it fail this time?

[ghost]

@javsalgar Success!!!
I'm using kibana chart version 8.1.4 and ran through the above steps. When the chart deployed I had my existing index set.

This resulted in a templates/kibana.yaml file which looks like the following:

apiVersion: v1
kind: ConfigMap
metadata:
  name: kibana
data:
  index.ndjson: |-
    {"attributes":{"fieldAttrs":"{}","fields":"[]","runtimeFieldMap":"{}","timeFieldName":"@timestamp","title":"fluentd*"},"coreMigrationVersion":"7.12.1","id":"c1fe4e50-c08e-11eb-bb66-4b8aa64ea517","migrationVersion":{"index-pattern":"7.11.0"},"references":[],"type":"index-pattern","updated_at":"2021-05-29T15:01:33.749Z","version":"WzE5LDFd"}
    {"exportedCount":1,"missingRefCount":0,"missingReferences":[]}

This is after I delete the managedFields which will apparently not show up starting at 1.21 (kubernetes/kubernetes#90066) as well as the creationTimestamp, namespace, resourceVersion, selfLink, and uid fields.

[javsalgar]

Thanks for letting us know!!