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H3N2_meta.js
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H3N2_meta.js
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var vaccineChoice = {};
vaccineChoice['A/Sydney/5/1997'] = "1997-09-25";
vaccineChoice['A/Moscow/10/1999'] = "1999-09-25";
vaccineChoice['A/Fujian/411/2002'] = "2003-09-25";
vaccineChoice['A/California/7/2004'] = "2005-02-21";
vaccineChoice['A/Wisconsin/67/2005'] = "2006-02-21";
vaccineChoice['A/Brisbane/10/2007'] = "2007-09-25";
vaccineChoice['A/Perth/16/2009'] = "2009-09-25";
vaccineChoice['A/Victoria/361/2011'] = "2012-02-21";
vaccineChoice['A/Texas/50/2012'] = "2013-09-25";
vaccineChoice['A/Switzerland/9715293/2013'] = "2014-09-25";
vaccineChoice['A/HongKong/4801/2014'] = "2015-09-24";
var vaccineStrains = Object.keys(vaccineChoice);
var branch_labels=false;
var restrictTo = {"region": "all"};
var genome_annotation = {'SP': [[1.2,1.2,1.2], [1,20,49]],
'HA1': [[1,1,1], [49,460,49+987]],
'HA2': [[1.2,1.2,1.2], [49+987,1200,1701]]};
var default_gene = 'HA1';
var structure = "5HMG.pdb"
var reference_viruses= {};
reference_viruses["A/Perth/16/2009"] = '2009-04-07';
reference_viruses["A/NewYork/55/2004"] = '2004-12-01';
reference_viruses["A/Philippines/825/2003"] = '2003-07-29';
reference_viruses["A/Netherlands/555/2012"] = '2012-12-17';
reference_viruses["A/Netherlands/118/2001"] = '2001-03-14';
reference_viruses["A/Canada/578/2004"] = '2004-05-09';
reference_viruses["A/Netherlands/5/1998"] = '1998-01-14';
reference_viruses["A/Louisiana/4/2003"] = '2003-08-01';
reference_viruses["A/Lyon/2279/1995"] = '1995-11-20';
reference_viruses["A/Victoria/210/2009"] = '2009-06-02';
reference_viruses["A/Texas/6/2004"] = '2004-09-02';
reference_viruses["A/Switzerland/9715293/2013"] = '2013-12-06';
reference_viruses["A/Netherlands/126/2001"] = '2001-03-21';
reference_viruses["A/Singapore/37/2004"] = '2004-05-01';
reference_viruses["A/Brisbane/24/2008"] = '2008-06-23';
reference_viruses["A/Malaysia/1/2004"] = '2004-01-02';
reference_viruses["A/Korea/770/2002"] = '2002-12-02';
reference_viruses["A/HongKong/5738/2014"] = '2014-04-30';
reference_viruses["A/Brisbane/8/1996"] = '1996-12-01';
reference_viruses["A/Texas/50/2012"] = '2012-04-15';
reference_viruses["A/Poland/1702/2014"] = '2014-04-08';
reference_viruses["A/Toulouse/878/2001"] = '2001-04-25';
reference_viruses["A/Victoria/523/2004"] = '2004-02-01';
reference_viruses["A/NewYork/39/2012"] = '2012-10-20';
reference_viruses["A/Lyon/1331/2006"] = '2006-12-22';
reference_viruses["A/Palau/6759/2014"] = '2014-03-26';
reference_viruses["A/SouthAustralia/3/2011"] = '2011-06-10';
reference_viruses["A/Victoria/361/2011"] = '2011-10-24';
reference_viruses["A/Serres/77/2007"] = '2007-11-01';
reference_viruses["A/Wyoming/2/2003"] = '2003-02-01';
reference_viruses["A/Samara/73/2013"] = '2013-03-12';
reference_viruses["A/Fukuoka/15/2002"] = '2002-02-23';
reference_viruses["A/HongKong/734/2001"] = '2001-06-01';
reference_viruses["A/Glasgow/407664/2012"] = '2012-04-03';
reference_viruses["A/Berlin/93/2011"] = '2011-07-03';
reference_viruses["A/Tasmania/11/2014"] = '2014-03-16';
reference_viruses["A/NorthCarolina/13/2014"] = '2014-04-15';
reference_viruses["A/HongKong/34430/2009"] = '2009-11-22';
reference_viruses["A/Hiroshima/52/2005"] = '2005-10-24';
reference_viruses["A/Philippines/472/2002"] = '2002-10-01';
reference_viruses["A/Peru/1296/2004"] = '2004-01-22';
reference_viruses["A/Guadeloupe/202/2010"] = '2010-11-30';
reference_viruses["A/Uruguay/716/2007"] = '2007-07-01';
reference_viruses["A/Stockholm/18/2011"] = '2011-02-21';
reference_viruses["A/Moscow/10/1999"] = '1999-06-01';
reference_viruses["A/Victoria/110/2004"] = '2004-10-01';
reference_viruses["A/Christchurch/28/2003"] = '2003-09-01';
reference_viruses["A/Victoria/208/2009"] = '2009-06-02';
reference_viruses["A/Wisconsin/67/2005"] = '2005-08-31';
reference_viruses["A/Norway/1789/2011"] = '2011-08-02';
reference_viruses["A/HongKong/3969/2011"] = '2011-05-19';
reference_viruses["A/Finland/9/2008"] = '2008-01-07';
reference_viruses["A/Netherlands/1/2002"] = '2002-01-07';
reference_viruses["A/Brisbane/10/2007"] = '2007-02-06';
reference_viruses["A/Washington/1/2004"] = '2004-10-14';
reference_viruses["A/HongKong/146/2013"] = '2013-01-11';
reference_viruses["A/Netherlands/124/2001"] = '2001-03-20';
reference_viruses["A/Victoria/513/2004"] = '2004-09-30';
reference_viruses["A/HongKong/1952/2009"] = '2009-03-24';
reference_viruses["A/Finland/190/2011"] = '2011-11-03';
reference_viruses["A/Wisconsin/15/2009"] = '2009-06-07';
reference_viruses["A/Sofia/319/2007"] = '2007-12-01';
reference_viruses["A/Singapore/15/2001"] = '2001-01-08';
reference_viruses["A/HongKong/26560/2009"] = '2009-09-18';
reference_viruses["A/California/7/2004"] = '2004-10-01';
reference_viruses["A/Tennessee/6/2004"] = '2004-08-17';
reference_viruses["A/Taiwan/1529/2003"] = '2003-09-07';
reference_viruses["A/Perth/10/2010"] = '2010-05-25';
reference_viruses["A/HongKong/1550/2002"] = '2002-01-19';
reference_viruses["A/Fujian/411/2002"] = '2002-01-01';
reference_viruses["A/Hawaii/22/2012"] = '2012-07-09';
reference_viruses["A/Brisbane/3/2005"] = '2005-11-01';
reference_viruses["A/Panama/2007/1999"] = '1999-07-01';
reference_viruses["A/Taiwan/8/2002"] = '2002-09-25';
reference_viruses["A/HongKong/1985/2009"] = '2009-04-04';
reference_viruses["A/Netherlands/22/2003"] = '2003-02-23';
reference_viruses["A/Stockholm/1/2013"] = '2013-01-13';
reference_viruses["A/SouthAfrica/4655/2013"] = '2013-06-25';
reference_viruses["A/Ukraine/13/2006"] = '2006-03-20';
reference_viruses["A/Nepal/1646/2004"] = '2004-07-01';
reference_viruses["A/Serbia/NS-210/2013"] = '2013-01-18';
reference_viruses["A/Brisbane/5/2002"] = '2002-03-01';
reference_viruses["A/England/259/2011"] = '2011-11-16';
reference_viruses["A/Wellington/1/2004"] = '2004-01-26';
reference_viruses["A/Almaty/2958/2013"] = '2013-01-27';
reference_viruses["A/Stockholm/6/2014"] = '2014-02-06';
reference_viruses["A/Texas/40/2003"] = '2003-09-01';
reference_viruses["A/Philippines/2191/2009"] = '2009-05-26';
reference_viruses["A/Iowa/19/2010"] = '2010-12-30';
reference_viruses["A/Auckland/10/1997"] = '1997-08-01';
reference_viruses["A/Norway/466/2014"] = '2014-02-03';
reference_viruses["A/Sydney/5/1997"] = '1997-06-01';
reference_viruses["A/Singapore/1/1996"] = '1996-02-12';