Untitled Workflow #1

Description

Components

The present workflow is composed by the following unique components (Note that some components may be repeated):

lifebitai_download_reads

Description: Downloads FastQ reads using SRA toolkit's fasterq-dump when provided with a list of accession numbers. For this component, reads are downloaded uncompressed.
Inputs: 1
Outputs: 1
Parameters: 0
Authors: @odiogosilva, @tiagofilipe12

lifebitai_fastqc

Description: Quality control assessment of FastQ files using FastQC.
Inputs: 1
Outputs: 1
Parameters: 0
Authors: @odiogosilva

Inputs

• --download_reads_1.accessions: Accession file CSV file with a label in the first column and the accession number in the second column.