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Fix saving / loading of tree sequences after simplification to a subset of sampled individuals #137

Merged
merged 12 commits into from
May 11, 2023
Merged

Fix saving / loading of tree sequences after simplification to a subset of sampled individuals #137

merged 12 commits into from
May 11, 2023

Commits on May 8, 2023

  1. Improve robustness of sampling schedules

    @bodkan
    bodkan committed May 8, 2023
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  2. Keep track of names of sampled individuals at each point

    @bodkan
    bodkan committed May 8, 2023
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  3. Only test for subsetted simplification result for slendr outputs

    @bodkan
    bodkan committed May 8, 2023
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  4. Add pure SLiM/msprime simplification tests

    @bodkan
    bodkan committed May 8, 2023
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  5. Fix issue with single pop sampling at multiple time points

    @bodkan
    bodkan committed May 8, 2023
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Commits on May 9, 2023

  1. Track information about sampled individuals' pedigree IDs through sim… 

    …plification
    @bodkan
    bodkan committed May 9, 2023
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  2. Add a comment

    @bodkan
    bodkan committed May 9, 2023
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  3. Add condition to unit test

    @bodkan
    bodkan committed May 9, 2023
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Commits on May 10, 2023

  1. Update bundled example model data

    @bodkan
    bodkan committed May 10, 2023
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  2. Replace print.slendr_nodes with summary.slendr_nodes

    @bodkan
    bodkan committed May 10, 2023
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  3. Update NEWS

    @bodkan
    bodkan committed May 10, 2023
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Commits on May 11, 2023

  1. Update website

    @bodkan
    bodkan committed May 11, 2023
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