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17 Open 59 Closed
17 Open 59 Closed
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Issues list

MAINT: move partitioning and collating actions to q2-types enhancement New feature or request
#172 opened May 23, 2024 by misialq Manuscript prep
@VinzentRisch
ENH: add ortholog prediction with a HMMER through search-eggnog-hmmer action enhancement New feature or request
#168 opened May 16, 2024 by Sann5
@Sann5
ENH: add fetch-hmmer-db action enhancement New feature or request
#167 opened May 16, 2024 by Sann5
1
@Sann5
ENH: allow using BUSCOResult during MAG dereplication enhancement New feature or request
#161 opened May 10, 2024 by misialq
ENH: output GFF files from the eggnog-diamond-search action enhancement New feature or request
#153 opened Apr 11, 2024 by misialq
ENH: allow binning across all samples dependent enhancement New feature or request
#152 opened Apr 11, 2024 by misialq
@misialq
4
ENH: add new action that can normalize a FeatureTable[Frequency] containing gene abundance counts with common methods. enhancement New feature or request
#141 opened Feb 22, 2024 by VinzentRisch
@VinzentRisch
MAINT: use new_taxdump in fetch-ncbi-taxonomy? enhancement New feature or request
#124 opened Jan 23, 2024 by Sann5
ENH: add fetch-busco-db action and update evaluate-busco accordingly enhancement New feature or request
#122 opened Jan 19, 2024 by Sann5
1
@Sann5
ENH: add support for other MAG dereplication tools enhancement New feature or request
#99 opened Nov 23, 2023 by misialq
ENH: add pavian as a visualization option for Kraken 2 results enhancement New feature or request
#90 opened Oct 19, 2023 by misialq
MAG workflow requires one or more missing actions to generate a DistanceMatrix enhancement New feature or request
#87 opened Oct 17, 2023 by colinvwood
6
replace all manual parsing of sample ids from contig file paths using the new sample dict enhancement New feature or request
#74 opened Oct 4, 2023 by colinvwood Manuscript prep
@colinvwood
2
add pre-commit hooks and reformat with Black maintenance
#40 opened May 12, 2023 by misialq
@misialq
add action for estimating (relative) abundances MAGs/MAG-based taxonomic profiles enhancement New feature or request
#33 opened Apr 14, 2023 by nbokulich Manuscript prep
@misialq
bin-contigs-metabat fails if no MAGs are formed for a sample bug Something isn't working
#27 opened Apr 4, 2023 by gregcaporaso
Add README documentation Improvements or additions to documentation maintenance
#15 opened Jun 27, 2022 by misialq
3 tasks
Manuscript prep
1
@misialq
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